Sequence Similarity Clusters for the Entities in PDB 1F3D

Entity #1 | Chains: J,L
CATALYTIC ANTIBODY 4B2 protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41167
95 % 33 146 149 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 37 156 149
70 % 366 2416 1
50 % 749 4892 1
40 % 749 4892 1
30 % 813 5759 1
Entity #2 | Chains: H,K
CATALYTIC ANTIBODY 4B2 protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41400
95 % 1 1 31581 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 1 1 30311
70 % 365 2366 2
50 % 750 4892 1
40 % 750 4892 1
30 % 814 5759 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures