Sequence Similarity Clusters for the Entities in PDB 1F3D

Entity #1 | Chains: J,L
CATALYTIC ANTIBODY 4B2 protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41725
95 % 33 148 151 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 37 158 148
70 % 384 2474 1
50 % 786 5011 1
40 % 786 5011 1
30 % 886 5941 1
Entity #2 | Chains: H,K
CATALYTIC ANTIBODY 4B2 protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41962
95 % 1 1 31992 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 1 1 30697
70 % 383 2424 2
50 % 787 5011 1
40 % 787 5011 1
30 % 887 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures