Sequence Similarity Clusters for the Entities in PDB 1F3D

Entity #1 | Chains: J,L
CATALYTIC ANTIBODY 4B2 protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35710
95 % 33 147 153 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 37 162 147
70 % 392 2553 1
50 % 804 5180 1
40 % 981 5834 1
30 % 1206 7269 1
Entity #2 | Chains: H,K
CATALYTIC ANTIBODY 4B2 protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39237
95 % 1 1 33168 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 1 1 31747
70 % 392 2511 2
50 % 805 5180 1
40 % 982 5834 1
30 % 1207 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures