Sequence Similarity Clusters for the Entities in PDB 1F3D

Entity #1 | Chains: J,L
CATALYTIC ANTIBODY 4B2 protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40343
95 % 33 146 147 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 37 156 148
70 % 348 2329 1
50 % 711 4717 1
40 % 711 4717 1
30 % 772 5571 1
Entity #2 | Chains: H,K
CATALYTIC ANTIBODY 4B2 protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40572
95 % 1 1 30996 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 1 1 29771
70 % 347 2282 2
50 % 712 4717 1
40 % 712 4717 1
30 % 773 5571 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.