Sequence Similarity Clusters for the Entities in PDB 1F34

Entity #1 | Chains: A
PEPSIN A protein, length: 326 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 11401
95 % 5 6 11437 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 5 6 11274
70 % 10 11 6117
50 % 21 22 2713
40 % 87 128 234
30 % 673 738 30
Entity #2 | Chains: B
MAJOR PEPSIN INHIBITOR PI-3 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 32866
95 % 2 2 28342 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 2 2 27236
70 % 2 2 24577
50 % 2 2 21082
40 % 2 2 18612
30 % 2 2 15589

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures