Sequence Similarity Clusters for the Entities in PDB 1F2U

Entity #1 | Chains: A,C
RAD50 ABC-ATPASE protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 23569
95 % 2 3 20242 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.8
PDBFlex
90 % 2 3 19684
70 % 2 3 18153
50 % 2 3 15744
40 % 2 3 13996
30 % 2 3 11967
Entity #2 | Chains: B,D
RAD50 ABC-ATPASE protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29814
95 % 2 3 20262 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 2.3
PDBFlex
90 % 2 3 19703
70 % 2 3 18172
50 % 2 3 15756
40 % 2 3 14008
30 % 2 3 11980

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures