Sequence Similarity Clusters for the Entities in PDB 1F2U

Entity #1 | Chains: A,C
RAD50 ABC-ATPASE protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 23196
95 % 2 3 19950 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.8
PDBFlex
90 % 2 3 19410
70 % 2 3 17914
50 % 2 3 15547
40 % 2 3 13826
30 % 2 3 11828
Entity #2 | Chains: B,D
RAD50 ABC-ATPASE protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29413
95 % 2 3 19970 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 2.3
PDBFlex
90 % 2 3 19429
70 % 2 3 17933
50 % 2 3 15559
40 % 2 3 13838
30 % 2 3 11841

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures