Sequence Similarity Clusters for the Entities in PDB 1F2I

Entity #1 | Chains: A,B,C,D,E,F
5'-D(*AP*TP*GP*GP*GP*CP*GP*CP*GP*CP*CP*CP*AP*T)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: G,H,I,J,K,L
FUSION OF N-TERMINAL 17-MER PEPTIDE EXTENSION TO ZIF12 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 14710
95 % 1 1 13908 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 1 1 13678
70 % 1 1 12843
50 % 1 1 11452
40 % 1 1 10373
30 % 1 1 9039

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures