Sequence Similarity Clusters for the Entities in PDB 1F2I

Entity #1 | Chains: A,B,C,D,E,F
5'-D(*AP*TP*GP*GP*GP*CP*GP*CP*GP*CP*CP*CP*AP*T)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: G,H,I,J,K,L
FUSION OF N-TERMINAL 17-MER PEPTIDE EXTENSION TO ZIF12 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 14392
95 % 1 1 13595 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 1 1 13335
70 % 1 1 12522
50 % 1 1 11152
40 % 1 1 10046
30 % 1 1 8584

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures