Sequence Similarity Clusters for the Entities in PDB 1F23

Entity #1 | Chains: A,B,C,D,E,F
TRANSMEMBRANE GLYCOPROTEIN protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 14187
95 % 10 13 3656 Flexibility: Low
Max RMSD: 4.6, Avg RMSD: 1.6
PDBFlex
90 % 10 13 3709
70 % 12 17 1696
50 % 12 17 1731
40 % 12 17 1734
30 % 12 17 1690

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1DF4 1 A HIV-1 ENVELOPE GLYCOPROTEIN GP41 RESIDUES 1 - 34 AND 41 - 68 CONNECTED BY A SIX-RESIDUE LINKER (SER-GLY-GLY-ARG- GLY-GLY) 11676
2 1QR9 1 A GP41 ENVELOPE PROTEIN SUBDOMAIN N34(L6)C28 11676
3 1I5X 1 A TRANSMEMBRANE GLYCOPROTEIN (GP41) N34(L6)C28 11676
4 1K33 1 A Transmembrane glycoprotein GP41 RESIDUES 1 - 34 AND 41 - 68 CONNECTED BY A SIX-RESIDUE LINKER (SER-GLY-GLY-ARG-GLY-GLY) gp41 ectodomain core 11676
5 1K34 1 A Transmembrane glycoprotein GP41 RESIDUES 1 - 34 AND 41 - 68 CONNECTED BY A SIX-RESIDUE LINKER (SER-GLY-GLY-ARG-GLY-GLY) gp41 ectodomain core 11676
6 2OT5 1 A HIV-1 gp41 glycoprotein Subdomain N34(L6)C28 11676
7 1DLB 1 A HIV-1 ENVELOPE GLYCOPROTEIN GP41 RESIDUES 1 - 34 AND 41 - 68 CONNECTED BY A SIX-RESIDUE LINKER (SER-GLY-GLY-ARG- GLY-GLY) 11676
8 1I5Y 1 A TRANSMEMBRANE GLYCOPROTEIN (GP41) N34(L6)C28 11676
9 1QR8 1 A GP41 ENVELOPE PROTEIN SUBDOMAIN N34(L6)C28 11676
10 1F23 1 A, B, C, D, E, F TRANSMEMBRANE GLYCOPROTEIN ECTODOMAIN 11676
11 1SZT 1 A HIV-1 ENVELOPE GLYCOPROTEIN GP41 CORE OF TRANSMEMBRANE SUBUNIT (GP41) RESIDUES 546 - 579 AND 628 - 655 CONNECTED BY A SIX-RESIDUE LINKER (SER-GLY-GLY-ARG-GLY-GLY) 11676
12 1DF5 1 A HIV-1 ENVELOPE GLYCOPROTEIN GP41 RESIDUES 1 - 34 AND 41 - 68 CONNECTED BY A SIX-RESIDUE LINKER (SER-GLY-GLY-ARG-GLY-GLY) 11676
13 2MK3 1 A Transmembrane glycoprotein, chimeric construct unp residues 93-126; unp residues 138-165 11676