Sequence Similarity Clusters for the Entities in PDB 1F23

Entity #1 | Chains: A,B,C,D,E,F
TRANSMEMBRANE GLYCOPROTEIN protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 12594
95 % 10 13 3677 Flexibility: Low
Max RMSD: 4.6, Avg RMSD: 1.5
PDBFlex
90 % 10 13 3747
70 % 12 17 1771
50 % 12 17 1800
40 % 12 17 1787
30 % 15 29 972

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1DF4 1 A HIV-1 ENVELOPE GLYCOPROTEIN GP41 RESIDUES 1 - 34 AND 41 - 68 CONNECTED BY A SIX-RESIDUE LINKER (SER-GLY-GLY-ARG- GLY-GLY) 11676
2 1QR9 1 A GP41 ENVELOPE PROTEIN SUBDOMAIN N34(L6)C28 11676
3 1I5X 1 A TRANSMEMBRANE GLYCOPROTEIN (GP41) N34(L6)C28 11676
4 1K33 1 A Transmembrane glycoprotein GP41 RESIDUES 1 - 34 AND 41 - 68 CONNECTED BY A SIX-RESIDUE LINKER (SER-GLY-GLY-ARG-GLY-GLY) gp41 ectodomain core 11676
5 1K34 1 A Transmembrane glycoprotein GP41 RESIDUES 1 - 34 AND 41 - 68 CONNECTED BY A SIX-RESIDUE LINKER (SER-GLY-GLY-ARG-GLY-GLY) gp41 ectodomain core 11676
6 5CN0 1 A Envelope glycoprotein,AP2 The fusion protein of expression tag, C-terminus residues 35-70 from gp4 and Artificial inhibitor AP1 C-terminus (UNP RESIDUES 35-70) 32630
7 2OT5 1 A HIV-1 gp41 glycoprotein Subdomain N34(L6)C28 11676
8 1DLB 1 A HIV-1 ENVELOPE GLYCOPROTEIN GP41 RESIDUES 1 - 34 AND 41 - 68 CONNECTED BY A SIX-RESIDUE LINKER (SER-GLY-GLY-ARG- GLY-GLY) 11676
9 1I5Y 1 A TRANSMEMBRANE GLYCOPROTEIN (GP41) N34(L6)C28 11676
10 1QR8 1 A GP41 ENVELOPE PROTEIN SUBDOMAIN N34(L6)C28 11676
11 5CMU 1 A, B, C Envelope glycoprotein,AP1 The fusion protein of expression tag, C-terminus residues 35-70 from gp4 and Artificial inhibitor AP1 C-terminus (UNP RESIDUES 35-70) 32630
12 1F23 1 A, B, C, D, E, F TRANSMEMBRANE GLYCOPROTEIN ECTODOMAIN 11676
13 5HFM 1 A, B, C, D, E, F Envelope glycoprotein gp160,gp41 CHR region UNP residues 539-581 11676
14 5HFL 1 A, B, C, D, E, F Envelope glycoprotein,gp41 CHR region UNP residues 35-70 11676
15 1SZT 1 A HIV-1 ENVELOPE GLYCOPROTEIN GP41 CORE OF TRANSMEMBRANE SUBUNIT (GP41) RESIDUES 546 - 579 AND 628 - 655 CONNECTED BY A SIX-RESIDUE LINKER (SER-GLY-GLY-ARG-GLY-GLY) 11676
16 1DF5 1 A HIV-1 ENVELOPE GLYCOPROTEIN GP41 RESIDUES 1 - 34 AND 41 - 68 CONNECTED BY A SIX-RESIDUE LINKER (SER-GLY-GLY-ARG-GLY-GLY) 11676
17 2MK3 1 A Transmembrane glycoprotein, chimeric construct unp residues 93-126; unp residues 138-165 11676