Sequence Similarity Clusters for the Entities in PDB 1F23

Entity #1 | Chains: A,B,C,D,E,F
TRANSMEMBRANE GLYCOPROTEIN protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 14393
95 % 10 13 3601 Flexibility: Low
Max RMSD: 4.6, Avg RMSD: 1.6
PDBFlex
90 % 10 13 3673
70 % 12 17 1719
50 % 12 17 1755
40 % 12 17 1747
30 % 15 29 960

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures