Sequence Similarity Clusters for the Entities in PDB 1F1J

Entity #1 | Chains: A,B
CASPASE-7 PROTEASE protein, length: 305 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36413
95 % 3 18 1493 Flexibility: Low
Max RMSD: 7.2, Avg RMSD: 2.0
PDBFlex
90 % 3 18 1525
70 % 3 18 1529
50 % 54 77 405
40 % 67 100 245
30 % 71 112 220
Entity #2 | Chains: C,D
ACE-ASP-GLU-VAL-ASP-CHO protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.