Sequence Similarity Clusters for the Entities in PDB 1F11

Entity #1 | Chains: A,C
F124 IMMUNOGLOBULIN (KAPPA LIGHT CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 25178
95 % 6 11 3963 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.3
PDBFlex
90 % 58 109 148
70 % 1722 2553 1
50 % 3497 5180 1
40 % 3961 5834 1
30 % 4928 7269 1
Entity #2 | Chains: B,D
F124 IMMUNOGLOBULIN (IGG1 HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30502
95 % 1 1 26561 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 2 3 14797
70 % 1690 2511 2
50 % 3498 5180 1
40 % 3962 5834 1
30 % 4929 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures