Sequence Similarity Clusters for the Entities in PDB 1F11

Entity #1 | Chains: A,C
F124 IMMUNOGLOBULIN (KAPPA LIGHT CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41355
95 % 6 11 3846 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.2
PDBFlex
90 % 56 103 153
70 % 1650 2426 1
50 % 3345 4913 1
40 % 3345 4913 1
30 % 3917 5780 1
Entity #2 | Chains: B,D
F124 IMMUNOGLOBULIN (IGG1 HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 41050
95 % 1 1 31382
90 % 2 3 14432
70 % 1613 2376 2
50 % 3346 4913 1
40 % 3346 4913 1
30 % 3918 5780 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures