Sequence Similarity Clusters for the Entities in PDB 1F0O

Entity #1 | Chains: C,D
(5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C-3') dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
TYPE II RESTRICTION ENZYME PVUII protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 5402
95 % 9 9 3375 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.8
PDBFlex
90 % 9 9 3423
70 % 9 9 3385
50 % 9 9 3299
40 % 9 9 3201
30 % 9 9 3005

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures