Sequence Similarity Clusters for the Entities in PDB 1EZV

Entity #1 | Chains: A
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 25914
95 % 4 8 6331 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 4 8 6324
70 % 4 8 6163
50 % 4 8 5759
40 % 4 8 5407
30 % 8 58 606
Entity #10 | Chains: X
HEAVY CHAIN (VH) OF FV-FRAGMENT protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 5886
95 % 4 8 6552 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 4 8 6536
70 % 29 39 1113
50 % 367 581 7
40 % 589 934 5
30 % 658 1062 7
Entity #11 | Chains: Y
LIGHT CHAIN (VL) OF FV-FRAGMENT protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 5914
95 % 4 8 6573 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 4 8 6554
70 % 121 191 73
50 % 192 308 22
40 % 590 934 5
30 % 659 1062 7
Entity #2 | Chains: B
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2 protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 5705
95 % 4 8 6374 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 4 8 6360
70 % 4 8 6194
50 % 4 8 5794
40 % 4 8 5433
30 % 4 8 4872
Entity #3 | Chains: C
CYTOCHROME B protein, length: 385 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 11866
95 % 4 8 6353 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 4 8 6344
70 % 4 8 6180
50 % 8 57 584
40 % 9 65 453
30 % 9 65 451
Entity #4 | Chains: D
CYTOCHROME C1 protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 5770
95 % 4 8 6437
90 % 4 8 6421
70 % 4 8 6265
50 % 8 54 620
40 % 8 54 656
30 % 9 62 470
Entity #5 | Chains: E
UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 5833
95 % 4 8 6496
90 % 4 8 6479
70 % 4 8 6316
50 % 8 52 671
40 % 9 60 496
30 % 9 60 496
Entity #6 | Chains: H
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 17 KD PROTEIN protein, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 10992
95 % 3 6 10970 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 6 10821
70 % 3 6 10270
50 % 3 6 9295
40 % 3 6 8501
30 % 3 6 7483
Entity #7 | Chains: F
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 5888
95 % 4 8 6554 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 4 8 6538
70 % 4 8 6375
50 % 4 8 5952
40 % 4 8 5573
30 % 4 8 4997
Entity #8 | Chains: G
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN QP-C protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 5926
95 % 4 8 6584 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 4 8 6565
70 % 4 8 6401
50 % 4 8 5976
40 % 4 8 5594
30 % 4 8 5022
Entity #9 | Chains: I
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.3 KD PROTEIN protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 24810
95 % 2 5 13632 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 5 13418
70 % 2 5 12616
50 % 2 5 11250
40 % 2 5 10202
30 % 2 5 8898

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures