Sequence Similarity Clusters for the Entities in PDB 1EZV

Entity #1 | Chains: A
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 25589
95 % 4 8 6259 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 4 8 6251
70 % 4 8 6101
50 % 4 8 5701
40 % 4 8 5352
30 % 8 58 601
Entity #10 | Chains: X
HEAVY CHAIN (VH) OF FV-FRAGMENT protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 5819
95 % 4 8 6480 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 4 8 6461
70 % 29 39 1102
50 % 362 576 7
40 % 584 929 5
30 % 652 1056 7
Entity #11 | Chains: Y
LIGHT CHAIN (VL) OF FV-FRAGMENT protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 5846
95 % 4 8 6502 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 4 8 6480
70 % 121 191 72
50 % 192 308 21
40 % 585 929 5
30 % 653 1056 7
Entity #2 | Chains: B
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2 protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 5635
95 % 4 8 6302 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 4 8 6287
70 % 4 8 6132
50 % 4 8 5736
40 % 4 8 5377
30 % 4 8 4828
Entity #3 | Chains: C
CYTOCHROME B protein, length: 385 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 11727
95 % 4 8 6281 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 4 8 6271
70 % 4 8 6118
50 % 8 57 574
40 % 9 65 449
30 % 9 65 449
Entity #4 | Chains: D
CYTOCHROME C1 protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 5702
95 % 4 8 6364
90 % 4 8 6348
70 % 4 8 6202
50 % 8 54 614
40 % 8 54 647
30 % 9 62 468
Entity #5 | Chains: E
UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 5765
95 % 4 8 6423
90 % 4 8 6405
70 % 4 8 6252
50 % 8 52 666
40 % 9 60 489
30 % 9 60 488
Entity #6 | Chains: H
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 17 KD PROTEIN protein, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 10862
95 % 3 6 10857 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 6 10713
70 % 3 6 10166
50 % 3 6 9200
40 % 3 6 8417
30 % 3 6 7412
Entity #7 | Chains: F
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 5821
95 % 4 8 6482 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 4 8 6463
70 % 4 8 6310
50 % 4 8 5890
40 % 4 8 5516
30 % 4 8 4952
Entity #8 | Chains: G
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN QP-C protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 5857
95 % 4 8 6512 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 4 8 6490
70 % 4 8 6336
50 % 4 8 5913
40 % 4 8 5535
30 % 4 8 4975
Entity #9 | Chains: I
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.3 KD PROTEIN protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 24505
95 % 2 5 13485 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 5 13271
70 % 2 5 12476
50 % 2 5 11129
40 % 2 5 10095
30 % 2 5 8802

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.