Sequence Similarity Clusters for the Entities in PDB 1EZV

Entity #1 | Chains: A
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 6642
95 % 4 8 6668 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 4 8 6658
70 % 4 8 6449
50 % 4 8 6018
40 % 4 8 5598
30 % 8 62 600
Entity #10 | Chains: X
HEAVY CHAIN (VH) OF FV-FRAGMENT protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 6576
95 % 4 8 6724 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 4 8 6712
70 % 50 76 542
50 % 380 609 6
40 % 3219 5750 1
30 % 3946 7168 1
Entity #11 | Chains: Y
LIGHT CHAIN (VL) OF FV-FRAGMENT protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 6675
95 % 4 8 6723 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 4 8 6711
70 % 132 215 58
50 % 192 317 23
40 % 223 361 26
30 % 3947 7168 1
Entity #2 | Chains: B
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2 protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 6520
95 % 4 8 6669 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 4 8 6659
70 % 4 8 6450
50 % 4 8 6019
40 % 4 8 5599
30 % 4 8 4930
Entity #3 | Chains: C
CYTOCHROME B protein, length: 385 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 14723
95 % 4 8 6789 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 4 8 6779
70 % 4 8 6572
50 % 8 61 555
40 % 9 69 449
30 % 9 69 463
Entity #4 | Chains: D
CYTOCHROME C1 protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 6521
95 % 4 8 6670
90 % 4 8 6660
70 % 4 8 6451
50 % 8 54 643
40 % 9 61 511
30 % 9 61 506
Entity #5 | Chains: E
UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 6668
95 % 4 8 6815
90 % 4 8 6800
70 % 4 8 6589
50 % 8 53 692
40 % 9 61 517
30 % 9 61 519
Entity #6 | Chains: H
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 17 KD PROTEIN protein, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 11701
95 % 3 6 11308 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 6 11160
70 % 3 6 10545
50 % 3 6 9496
40 % 3 6 8607
30 % 3 6 7440
Entity #7 | Chains: F
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 6522
95 % 4 8 6671 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 4 8 6661
70 % 4 8 6452
50 % 4 8 6020
40 % 4 8 5600
30 % 4 8 4931
Entity #8 | Chains: G
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN QP-C protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 6519
95 % 4 8 6787 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 4 8 6778
70 % 4 8 6570
50 % 4 8 6131
40 % 4 8 5597
30 % 4 8 4929
Entity #9 | Chains: I
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.3 KD PROTEIN protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 29053
95 % 2 5 13687 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 5 13446
70 % 2 5 11799
50 % 2 5 10530
40 % 2 5 9506
30 % 2 5 8140

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures