Sequence Similarity Clusters for the Entities in PDB 1EYU

Entity #1 | Chains: C,D
DNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C)-3') dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
TYPE II RESTRICTION ENZYME PVUII protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 5313
95 % 3 9 3322 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.8
PDBFlex
90 % 3 9 3371
70 % 3 9 3336
50 % 3 9 3254
40 % 3 9 3163
30 % 3 9 2972

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.