Sequence Similarity Clusters for the Entities in PDB 1EYS

Entity #1 | Chains: C
PHOTOSYNTHETIC REACTION CENTER protein, length: 382 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 53858
95 % 1 3 16319 Flexibility: Medium
Max RMSD: 5.6, Avg RMSD: 5.6
PDBFlex
90 % 1 3 16010
70 % 1 3 14963
50 % 1 3 13163
40 % 1 3 11874
30 % 1 3 10291
Entity #2 | Chains: L
PHOTOSYNTHETIC REACTION CENTER protein, length: 280 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57134
95 % 1 5 9018 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 5 8935
70 % 1 5 8584
50 % 42 129 360
40 % 42 129 380
30 % 42 129 380
Entity #3 | Chains: M
PHOTOSYNTHETIC REACTION CENTER protein, length: 324 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 55512
95 % 1 5 8843 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.4
PDBFlex
90 % 1 5 8767
70 % 1 5 8431
50 % 42 129 359
40 % 42 129 379
30 % 42 129 379
Entity #4 | Chains: H
PHOTOSYNTHETIC REACTION CENTER protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58096
95 % 1 5 9117 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 5 9026
70 % 1 5 8665
50 % 1 5 7861
40 % 42 129 381
30 % 42 129 381

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.