Sequence Similarity Clusters for the Entities in PDB 1EYS

Entity #1 | Chains: C
PHOTOSYNTHETIC REACTION CENTER protein, length: 382 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54694
95 % 1 3 16599 Flexibility: Medium
Max RMSD: 5.6, Avg RMSD: 5.6
PDBFlex
90 % 1 3 16284
70 % 1 3 15201
50 % 1 3 13369
40 % 1 3 12055
30 % 1 3 10444
Entity #2 | Chains: L
PHOTOSYNTHETIC REACTION CENTER protein, length: 280 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58002
95 % 1 5 9140 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 5 9056
70 % 1 5 8699
50 % 42 129 381
40 % 42 129 408
30 % 42 129 409
Entity #3 | Chains: M
PHOTOSYNTHETIC REACTION CENTER protein, length: 324 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56368
95 % 1 5 8966 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.4
PDBFlex
90 % 1 5 8888
70 % 1 5 8546
50 % 42 129 380
40 % 42 129 406
30 % 42 129 407
Entity #4 | Chains: H
PHOTOSYNTHETIC REACTION CENTER protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58978
95 % 1 5 9243 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 5 9151
70 % 1 5 8784
50 % 1 5 7975
40 % 42 129 409
30 % 42 129 410

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures