Sequence Similarity Clusters for the Entities in PDB 1EYS

Entity #1 | Chains: C
PHOTOSYNTHETIC REACTION CENTER protein, length: 382 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 53247
95 % 1 3 16151 Flexibility: Medium
Max RMSD: 5.6, Avg RMSD: 5.6
PDBFlex
90 % 1 3 15840
70 % 1 3 14805
50 % 1 3 13032
40 % 1 3 11762
30 % 1 3 10193
Entity #2 | Chains: L
PHOTOSYNTHETIC REACTION CENTER protein, length: 280 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56498
95 % 1 5 8909 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 5 8835
70 % 1 5 8504
50 % 42 129 349
40 % 42 129 376
30 % 42 129 376
Entity #3 | Chains: M
PHOTOSYNTHETIC REACTION CENTER protein, length: 324 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54882
95 % 1 5 8732 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.4
PDBFlex
90 % 1 5 8665
70 % 1 5 8348
50 % 42 129 348
40 % 42 129 375
30 % 42 129 375
Entity #4 | Chains: H
PHOTOSYNTHETIC REACTION CENTER protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57451
95 % 1 5 9007 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 5 8925
70 % 1 5 8584
50 % 1 5 7781
40 % 42 129 377
30 % 42 129 377

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.