Sequence Similarity Clusters for the Entities in PDB 1EXD

Entity #1 | Chains: B
GLUTAMINE TRNA APTAMER rna, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
GLUTAMINYL-TRNA SYNTHETASE protein, length: 548 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 16 3873
95 % 12 19 3450 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.7
PDBFlex
90 % 12 19 3514
70 % 12 19 3453
50 % 13 21 2907
40 % 13 21 2837
30 % 13 21 2615

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures