Sequence Similarity Clusters for the Entities in PDB 1EUD

Entity #1 | Chains: A
SUCCINYL-COA SYNTHETASE, ALPHA CHAIN protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 8704
95 % 1 8 9011 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 8 8934
70 % 1 8 8591
50 % 3 23 1480
40 % 3 23 1491
30 % 3 23 1463
Entity #2 | Chains: B
SUCCINYL-COA SYNTHETASE, BETA CHAIN protein, length: 396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 34410
95 % 1 8 8673 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.7
PDBFlex
90 % 1 8 8608
70 % 1 8 8288
50 % 1 8 7590
40 % 1 20 1630
30 % 1 20 1602

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures