Sequence Similarity Clusters for the Entities in PDB 1ESG

Entity #1 | Chains: C
DNA (5'-D(*TP*GP*GP*AP*TP*TP*CP*A)-3') dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
DNA (5'-D(*TP*GP*AP*AP*TP*CP*CP*A)-3') dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
TYPE II RESTRICTION ENZYME BAMHI protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 8422
95 % 1 5 8467 Flexibility: Medium
Max RMSD: 6.7, Avg RMSD: 3.7
PDBFlex
90 % 1 5 8400
70 % 1 5 8091
50 % 1 5 7434
40 % 1 5 6838
30 % 1 5 5989

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures