Sequence Similarity Clusters for the Entities in PDB 1ES6

Entity #1 | Chains: A
MATRIX PROTEIN VP40 protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 55159
95 % 1 4 6722 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.9
PDBFlex
90 % 1 4 6708
70 % 2 5 6019
50 % 2 5 5635
40 % 2 5 5270
30 % 2 5 4736

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.