Sequence Similarity Clusters for the Entities in PDB 1ES0

Entity #1 | Chains: A
H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 4915
95 % 2 7 5605 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 10 23 1398
70 % 21 44 714
50 % 78 146 173
40 % 78 146 188
30 % 161 304 93
Entity #2 | Chains: B
65 KD GLUTAMIC ACID DECARBOXYLASE+H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 12346
95 % 1 4 11892 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 7 14 3466
70 % 75 137 163
50 % 78 146 172
40 % 78 146 187
30 % 162 304 93

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.