Sequence Similarity Clusters for the Entities in PDB 1ES0

Entity #1 | Chains: A
H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 4211
95 % 5 10 4616 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 13 26 1420
70 % 25 48 703
50 % 91 161 184
40 % 91 161 195
30 % 187 334 98
Entity #2 | Chains: B
65 KD GLUTAMIC ACID DECARBOXYLASE+H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 13357
95 % 4 7 8076 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 10 17 3103
70 % 88 152 161
50 % 91 161 183
40 % 91 161 194
30 % 188 334 98

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures