Sequence Similarity Clusters for the Entities in PDB 1ES0

Entity #1 | Chains: A
H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 4145
95 % 5 10 4555 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 13 26 1399
70 % 25 48 695
50 % 91 161 179
40 % 91 161 194
30 % 187 334 89
Entity #2 | Chains: B
65 KD GLUTAMIC ACID DECARBOXYLASE+H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 13153
95 % 4 7 7960 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 10 17 3069
70 % 88 152 159
50 % 91 161 178
40 % 91 161 193
30 % 188 334 89

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures