Sequence Similarity Clusters for the Entities in PDB 1ES0

Entity #1 | Chains: A
H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 5179
95 % 2 7 5883 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 10 23 1472
70 % 21 44 756
50 % 80 149 180
40 % 80 149 196
30 % 165 310 98
Entity #2 | Chains: B
65 KD GLUTAMIC ACID DECARBOXYLASE+H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 12863
95 % 1 4 12392 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 7 14 3600
70 % 77 140 164
50 % 80 149 179
40 % 80 149 195
30 % 166 310 98

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.