Sequence Similarity Clusters for the Entities in PDB 1EQZ

Entity #1 | Chains: I,J
146 NUCLEOTIDES LONG DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
PROTEIN (HISTONE H2A) protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 5626
95 % 34 140 86
90 % 36 148 78
70 % 37 154 90
50 % 42 164 120
40 % 42 164 139
30 % 42 164 152
Entity #3 | Chains: B,F
PROTEIN (HISTONE H2B) protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 7195
95 % 34 135 111
90 % 34 140 107
70 % 36 147 104
50 % 36 147 140
40 % 36 147 156
30 % 36 147 174
Entity #4 | Chains: C,G
PROTEIN (HISTONE H3) protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 19 1122
95 % 42 150 76
90 % 42 153 77
70 % 42 154 96
50 % 42 157 131
40 % 42 157 146
30 % 42 157 161
Entity #5 | Chains: D,H
PROTEIN (HISTONE H4) protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 141 76
95 % 44 160 74
90 % 44 165 75
70 % 44 165 87
50 % 44 165 123
40 % 44 165 140
30 % 44 165 155

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.