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X-RAY STRUCTURE OF THE NUCLEOSOME CORE PARTICLE AT 2.5 A RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1EQZ
Sequence Clusters for the Sequence Entities in PDB 1EQZ
Entity #1: Chains: I,J - 146 NUCLEOTIDES LONG DNA dna, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: A,E - PROTEIN (HISTONE H2A) protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 4090
95% 17 84 86
90% 20 90 91
70% 20 93 106
50% 22 99 131
40% 22 99 159
30% 22 99 183
Entity #3: Chains: B,F - PROTEIN (HISTONE H2B) protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 5 5267
95% 18 84 88
90% 18 86 96
70% 20 92 109
50% 20 92 147
40% 20 92 174
30% 20 92 197
Entity #4: Chains: C,G - PROTEIN (HISTONE H3) protein, length: 136 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 13 1328
95% 26 95 82
90% 26 98 85
70% 26 98 105
50% 26 100 139
40% 26 100 168
30% 26 100 191
Entity #5: Chains: D,H - PROTEIN (HISTONE H4) protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 82 60
95% 26 97 79
90% 26 101 80
70% 26 101 100
50% 26 101 134
40% 26 101 163
30% 26 101 187
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.