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An Information Portal to 111558 Biological Macromolecular Structures

X-RAY STRUCTURE OF THE NUCLEOSOME CORE PARTICLE AT 2.5 A RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1EQZ
Sequence Clusters for the Sequence Entities in PDB 1EQZ
Entity #1: Chains: I,J - 146 NUCLEOTIDES LONG DNA dna, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: A,E - PROTEIN (HISTONE H2A) protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 4569
95% 17 86 138
90% 20 93 134
70% 20 96 149
50% 22 102 167
40% 22 102 184
30% 22 102 200
Entity #3: Chains: B,F - PROTEIN (HISTONE H2B) protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 5 5824
95% 18 86 139
90% 18 88 148
70% 20 95 154
50% 20 95 187
40% 20 95 203
30% 20 95 219
Entity #4: Chains: C,G - PROTEIN (HISTONE H3) protein, length: 136 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 15 1258
95% 26 100 123
90% 26 103 127
70% 26 103 144
50% 26 106 166
40% 26 106 183
30% 26 106 199
Entity #5: Chains: D,H - PROTEIN (HISTONE H4) protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 90 96
95% 27 107 118
90% 27 111 114
70% 27 111 129
50% 27 111 155
40% 27 111 173
30% 27 111 187
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.