POP-OUT | CLOSE

An Information Portal to 109093 Biological Macromolecular Structures

X-RAY STRUCTURE OF THE NUCLEOSOME CORE PARTICLE AT 2.5 A RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1EQZ
Sequence Clusters for the Sequence Entities in PDB 1EQZ
Entity #1: Chains: I,J - 146 NUCLEOTIDES LONG DNA dna, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: A,E - PROTEIN (HISTONE H2A) protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 4431
95% 17 86 133
90% 20 92 129
70% 20 95 130
50% 22 101 153
40% 22 101 175
30% 22 101 192
Entity #3: Chains: B,F - PROTEIN (HISTONE H2B) protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 5 5648
95% 18 86 134
90% 18 88 142
70% 20 94 148
50% 20 94 183
40% 20 94 200
30% 20 94 216
Entity #4: Chains: C,G - PROTEIN (HISTONE H3) protein, length: 136 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 14 1329
95% 26 98 120
90% 26 101 110
70% 26 101 129
50% 26 104 165
40% 26 104 186
30% 26 104 203
Entity #5: Chains: D,H - PROTEIN (HISTONE H4) protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 84 98
95% 26 100 116
90% 26 104 100
70% 26 104 120
50% 26 104 157
40% 26 104 179
30% 26 104 197
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.