Sequence Similarity Clusters for the Entities in PDB 1EQZ

Entity #1 | Chains: I,J
146 NUCLEOTIDES LONG DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
PROTEIN (HISTONE H2A) protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 5253
95 % 29 125 111
90 % 32 134 107
70 % 33 140 97
50 % 38 150 123
40 % 38 150 140
30 % 38 150 154
Entity #3 | Chains: B,F
PROTEIN (HISTONE H2B) protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 6716
95 % 30 124 115
90 % 30 127 116
70 % 32 134 123
50 % 32 134 151
40 % 32 134 167
30 % 32 134 183
Entity #4 | Chains: C,G
PROTEIN (HISTONE H3) protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 17 1185
95 % 38 137 105
90 % 38 140 105
70 % 38 141 116
50 % 38 144 139
40 % 38 144 156
30 % 38 144 173
Entity #5 | Chains: D,H
PROTEIN (HISTONE H4) protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 128 85
95 % 40 147 77
90 % 40 152 74
70 % 40 152 89
50 % 40 152 127
40 % 40 152 146
30 % 40 152 160

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.