Sequence Similarity Clusters for the Entities in PDB 1EQZ

Entity #1 | Chains: I,J
146 NUCLEOTIDES LONG DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
PROTEIN (HISTONE H2A) protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 5056
95 % 29 123 111
90 % 32 132 104
70 % 33 136 97
50 % 38 146 124
40 % 38 146 142
30 % 38 146 154
Entity #3 | Chains: B,F
PROTEIN (HISTONE H2B) protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 6467
95 % 30 122 113
90 % 30 125 116
70 % 32 131 123
50 % 32 131 151
40 % 32 131 170
30 % 32 131 184
Entity #4 | Chains: C,G
PROTEIN (HISTONE H3) protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 17 1136
95 % 38 134 101
90 % 38 137 102
70 % 38 138 104
50 % 38 141 136
40 % 38 141 152
30 % 38 141 173
Entity #5 | Chains: D,H
PROTEIN (HISTONE H4) protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 125 83
95 % 40 144 75
90 % 40 149 74
70 % 40 149 88
50 % 40 149 126
40 % 40 149 145
30 % 40 149 157

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.