Sequence Similarity Clusters for the Entities in PDB 1EQQ

Entity #1 | Chains: M,N
5'-R(*(5MU)P*(5MU)P*(5MU))-3' rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C,D
SINGLE STRANDED DNA BINDING PROTEIN protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 9844
95 % 2 2 9652 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.9
PDBFlex
90 % 2 2 9528
70 % 2 2 9090
50 % 3 3 5644
40 % 3 3 5273
30 % 12 13 1479

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4MZ9 1 A, B, C, D Single-stranded DNA-binding protein 562
2 3TQY 1 A, B, C, D Single-stranded DNA-binding protein 777 2.7.7.6 | Details
3 1EQQ 2 A, B, C, D SINGLE STRANDED DNA BINDING PROTEIN 562