Sequence Similarity Clusters for the Entities in PDB 1EQQ

Entity #1 | Chains: M,N
5'-R(*(5MU)P*(5MU)P*(5MU))-3' rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C,D
SINGLE STRANDED DNA BINDING PROTEIN protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 9321
95 % 2 2 9496 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.9
PDBFlex
90 % 2 2 9388
70 % 2 2 8973
50 % 3 3 5443
40 % 3 3 5113
30 % 12 13 1417

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.