Sequence Similarity Clusters for the Entities in PDB 1EQQ

Entity #1 | Chains: M,N
5'-R(*(5MU)P*(5MU)P*(5MU))-3' rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C,D
SINGLE STRANDED DNA BINDING PROTEIN protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 9537
95 % 2 2 9680 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.9
PDBFlex
90 % 2 2 9571
70 % 2 2 9141
50 % 3 3 5548
40 % 3 3 5212
30 % 12 13 1442

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures