Sequence Similarity Clusters for the Entities in PDB 1EQQ

Entity #1 | Chains: M,N
5'-R(*(5MU)P*(5MU)P*(5MU))-3' rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C,D
SINGLE STRANDED DNA BINDING PROTEIN protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 9704
95 % 2 2 9826 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.9
PDBFlex
90 % 2 2 9714
70 % 2 2 9267
50 % 3 3 5612
40 % 3 3 5266
30 % 12 13 1462

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures