Sequence Similarity Clusters for the Entities in PDB 1EQF

Entity #1 | Chains: A
RNA POLYMERASE II TRANSCRIPTION INITIATION FACTOR protein, length: 280 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 26761
95 % 2 3 22452 Flexibility: High
Max RMSD: 10.7, Avg RMSD: 10.7
PDBFlex
90 % 2 3 21803
70 % 2 3 20007
50 % 2 3 17348
40 % 2 3 15480
30 % 2 3 13255

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures