Sequence Similarity Clusters for the Entities in PDB 1EQF

Entity #1 | Chains: A
RNA POLYMERASE II TRANSCRIPTION INITIATION FACTOR protein, length: 280 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 24163
95 % 2 4 21444 Flexibility: High
Max RMSD: 10.7, Avg RMSD: 10.7
PDBFlex
90 % 2 4 20808
70 % 2 4 19068
50 % 2 4 16513
40 % 2 4 14620
30 % 2 4 12255

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures