Sequence Similarity Clusters for the Entities in PDB 1EQD

Entity #1 | Chains: A
NITROPHORIN 4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 40 40 1074
95 % 48 48 1080 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 48 54 864
70 % 48 54 912
50 % 48 54 957
40 % 65 76 705
30 % 65 79 593

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1X8Q 1 A Nitrophorin 4 13249 1.7.6.1 | Details
2 1X8P 1 A Nitrophorin 4 13249 1.7.6.1 | Details
3 1YWA 1 A nitrophorin 4 13249 1.7.6.1 | Details
4 1YWB 1 A nitrophorin 4 13249 1.7.6.1 | Details
5 1X8O 1 A Nitrophorin 4 13249 1.7.6.1 | Details
6 1YWC 1 A nitrophorin 4 13249 1.7.6.1 | Details
7 2OFR 1 X Nitrophorin-4 13249 1.7.6.1 | Details
8 1SY1 1 A Nitrophorin 4 13249 1.7.6.1 | Details
9 2AT0 1 X Nitrophorin 4 13249 1.7.6.1 | Details
10 1SY3 1 A Nitrophorin 4 13249 1.7.6.1 | Details
11 2AT3 1 X Nitrophorin 4 13249 1.7.6.1 | Details
12 3C78 1 X Nitrophorin-4 13249 1.7.6.1 | Details
13 1SXX 1 A Nitrophorin 4 13249 1.7.6.1 | Details
14 1SY2 1 A Nitrophorin 4 13249 1.7.6.1 | Details
15 2AT8 1 X Nitrophorin 4 13249 1.7.6.1 | Details
16 1KOI 1 A NITROPHORIN 4 NITRIC OXIDE OCCUPIES THE SIXTH COORDINATION POSITION OF THE IRON. THE HEME IS DISORDERED BY A ROTATION OF 180 DEGREES AROUND THE CHA-FE-CHC AXIS. THE ONLY EVIDENCE OF THIS DISORDER IS THE APPEARANCE OF METHYL GROUPS CMB AND CMC AS VINYLS. THESE EXTRA ATOMS ARE CALLED CBBB AND CBCB. 13249 1.7.6.1 | Details
17 1SXW 1 A Nitrophorin 4 13249 1.7.6.1 | Details
18 3C76 1 X Nitrophorin-4 13249 1.7.6.1 | Details
19 1X8N 1 A Nitrophorin 4 13249 1.7.6.1 | Details
20 3C77 1 X Nitrophorin-4 13249 1.7.6.1 | Details
21 1YWD 1 A nitrophorin 4 13249 1.7.6.1 | Details
22 1SXY 1 A Nitrophorin 4 13249 1.7.6.1 | Details
23 2OFM 1 X Nitrophorin-4 13249 1.7.6.1 | Details
24 1D2U 1 A NITROPHORIN 4 RESIDUES 22-205 13249 1.7.6.1 | Details
25 1SY0 1 A Nitrophorin 4 13249 1.7.6.1 | Details
26 4GRJ 1 A, B Nitrophorin-4 13249 1.7.6.1 | Details
27 4GNW 1 A, B Nitrophorin-4 13249 1.7.6.1 | Details
28 2AT5 1 X Nitrophorin 4 13249 1.7.6.1 | Details
29 2AT6 1 X Nitrophorin 4 13249 1.7.6.1 | Details
30 1IKJ 1 A NITROPHORIN 4 IMIDAZOLE OCCUPIES THE FE SIXTH COORDINATION POSITION THE HEME IS DISORDERED BY A ROTATION OF 180 DEGREES AROUND THE CHA-FE-CHC AXIS. THE ONLY EVIDENCE OF THIS DISORDER IS THE APPEARANCE OF METHYL GROUPS CMB AND CMC AS VINYLS. THESE EXTRA ATOMS ARE CALLED CBBB AND CBCB. THE LOOP CONTAINING RESIDUES 125-130 IS DISORDERED. IT HAS BEEN BUILT IN TWO POSITIONS, BUT THIS MODEL DOES NOT COMPLETELY EXPLAIN THE ELECTRON DENSITY. 13249 1.7.6.1 | Details
31 1ML7 1 A nitrophorin 4 13249 1.7.6.1 | Details
32 4HPD 1 A Nitrophorin-4 13249 1.7.6.1 | Details
33 3TGA 1 A Nitrophorin-4 13249 1.7.6.1 | Details
34 3TGB 1 A Nitrophorin-4 13249 1.7.6.1 | Details
35 3MVF 1 A Nitrophorin-4 13249 1.7.6.1 | Details
36 4HPC 1 A Nitrophorin-4 13249 1.7.6.1 | Details
37 1SXU 1 A Nitrophorin 4 13249 1.7.6.1 | Details
38 3TGC 1 A Nitrophorin-4 13249 1.7.6.1 | Details
39 1U0X 1 A Nitrophorin 4 13249 1.7.6.1 | Details
40 1ERX 1 A NITROPHORIN 4 13249 1.7.6.1 | Details
41 5HWZ 1 A Nitrophorin-4 D30N mutant 13249 1.7.6.1 | Details
42 4HPA 1 A Nitrophorin-4 13249 1.7.6.1 | Details
43 1D3S 1 A NITROPHORIN 4 RESIDUES 22-205 13249 1.7.6.1 | Details
44 3FLL 1 A Nitrophorin-4 UNP residues 22-205 13249 1.7.6.1 | Details
45 1IKE 1 A Nitrophorin 4 13249 1.7.6.1 | Details
46 4HPB 1 A Nitrophorin-4 13249 1.7.6.1 | Details
47 1NP4 1 A PROTEIN (NITROPHORIN 4) 13249 1.7.6.1 | Details
48 1EQD 1 A NITROPHORIN 4 13249 1.7.6.1 | Details
49 1U17 1 A, B Nitrophorin 1 13249
50 1U18 1 A, B Nitrophorin 1 13249
51 1NP1 1 A, B NITROPHORIN 1 13249
52 2NP1 1 A, B NITROPHORIN 1 13249
53 4NP1 1 A, B NITROPHORIN 1 13249
54 3NP1 1 A, B NITROPHORIN 1 13249