Sequence Similarity Clusters for the Entities in PDB 1EQD

Entity #1 | Chains: A
NITROPHORIN 4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 40 40 1136
95 % 48 48 1138 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 48 54 902
70 % 48 54 946
50 % 48 54 992
40 % 65 76 733
30 % 65 79 605

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1X8Q 1 A Nitrophorin 4 13249 1.7.6.1 | Details
2 1X8P 1 A Nitrophorin 4 13249 1.7.6.1 | Details
3 1YWA 1 A nitrophorin 4 13249 1.7.6.1 | Details
4 1YWB 1 A nitrophorin 4 13249 1.7.6.1 | Details
5 1X8O 1 A Nitrophorin 4 13249 1.7.6.1 | Details
6 1YWC 1 A nitrophorin 4 13249 1.7.6.1 | Details
7 2AT0 1 X Nitrophorin 4 13249 1.7.6.1 | Details
8 1SY3 1 A Nitrophorin 4 13249 1.7.6.1 | Details
9 2AT3 1 X Nitrophorin 4 13249 1.7.6.1 | Details
10 3C78 1 X Nitrophorin-4 13249 1.7.6.1 | Details
11 2AT8 1 X Nitrophorin 4 13249 1.7.6.1 | Details
12 1KOI 1 A NITROPHORIN 4 NITRIC OXIDE OCCUPIES THE SIXTH COORDINATION POSITION OF THE IRON. THE HEME IS DISORDERED BY A ROTATION OF 180 DEGREES AROUND THE CHA-FE-CHC AXIS. THE ONLY EVIDENCE OF THIS DISORDER IS THE APPEARANCE OF METHYL GROUPS CMB AND CMC AS VINYLS. THESE EXTRA ATOMS ARE CALLED CBBB AND CBCB. 13249 1.7.6.1 | Details
13 1SXW 1 A Nitrophorin 4 13249 1.7.6.1 | Details
14 3C76 1 X Nitrophorin-4 13249 1.7.6.1 | Details
15 1X8N 1 A Nitrophorin 4 13249 1.7.6.1 | Details
16 3C77 1 X Nitrophorin-4 13249 1.7.6.1 | Details
17 1YWD 1 A nitrophorin 4 13249 1.7.6.1 | Details
18 1SXY 1 A Nitrophorin 4 13249 1.7.6.1 | Details
19 2OFM 1 X Nitrophorin-4 13249 1.7.6.1 | Details
20 1D2U 1 A NITROPHORIN 4 RESIDUES 22-205 13249 1.7.6.1 | Details
21 4GRJ 1 A, B Nitrophorin-4 13249 1.7.6.1 | Details
22 4GNW 1 A, B Nitrophorin-4 13249 1.7.6.1 | Details
23 2AT5 1 X Nitrophorin 4 13249 1.7.6.1 | Details
24 2AT6 1 X Nitrophorin 4 13249 1.7.6.1 | Details
25 1IKJ 1 A NITROPHORIN 4 IMIDAZOLE OCCUPIES THE FE SIXTH COORDINATION POSITION THE HEME IS DISORDERED BY A ROTATION OF 180 DEGREES AROUND THE CHA-FE-CHC AXIS. THE ONLY EVIDENCE OF THIS DISORDER IS THE APPEARANCE OF METHYL GROUPS CMB AND CMC AS VINYLS. THESE EXTRA ATOMS ARE CALLED CBBB AND CBCB. THE LOOP CONTAINING RESIDUES 125-130 IS DISORDERED. IT HAS BEEN BUILT IN TWO POSITIONS, BUT THIS MODEL DOES NOT COMPLETELY EXPLAIN THE ELECTRON DENSITY. 13249 1.7.6.1 | Details
26 1ML7 1 A nitrophorin 4 13249 1.7.6.1 | Details
27 4HPD 1 A Nitrophorin-4 13249 1.7.6.1 | Details
28 3MVF 1 A Nitrophorin-4 13249 1.7.6.1 | Details
29 4HPC 1 A Nitrophorin-4 13249 1.7.6.1 | Details
30 1SXU 1 A Nitrophorin 4 13249 1.7.6.1 | Details
31 1U0X 1 A Nitrophorin 4 13249 1.7.6.1 | Details
32 1ERX 1 A NITROPHORIN 4 13249 1.7.6.1 | Details
33 5HWZ 1 A Nitrophorin-4 D30N mutant 13249 1.7.6.1 | Details
34 4HPA 1 A Nitrophorin-4 13249 1.7.6.1 | Details
35 1D3S 1 A NITROPHORIN 4 RESIDUES 22-205 13249 1.7.6.1 | Details
36 3FLL 1 A Nitrophorin-4 UNP residues 22-205 13249 1.7.6.1 | Details
37 1IKE 1 A Nitrophorin 4 13249 1.7.6.1 | Details
38 4HPB 1 A Nitrophorin-4 13249 1.7.6.1 | Details
39 1NP4 1 A PROTEIN (NITROPHORIN 4) 13249 1.7.6.1 | Details
40 1EQD 1 A NITROPHORIN 4 13249 1.7.6.1 | Details