Sequence Similarity Clusters for the Entities in PDB 1EOO

Entity #1 | Chains: C,D
DNA (5'-D(*GP*AP*AP*GP*AP*TP*AP*TP*CP*TP*TP*C)-3') dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
TYPE II RESTRICTION ENZYME ECORV protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 23 817
95 % 25 31 796 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.8
PDBFlex
90 % 25 31 824
70 % 25 31 861
50 % 25 31 913
40 % 25 31 941
30 % 25 31 924

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1SX5 3 A, B Type II restriction enzyme EcoRV 562 3.1.21.4 | Details
2 5F8A 2 A, B Type-2 restriction enzyme EcoRV 562 3.1.21.4 | Details
3 1EON 3 A, B TYPE II RESTRICTION ENZYME ECORV 562 3.1.21.4 | Details
4 1SUZ 2 A, B Type II restriction enzyme EcoRV 562 3.1.21.4 | Details
5 1RVA 2 A, B PROTEIN (ECO RV (E.C.3.1.21.4)) 562 3.1.21.4 | Details
6 5HLK 1 A, B Type-2 restriction enzyme EcoRV 562 3.1.21.4 | Details
7 1B94 2 A, B RESTRICTION ENDONUCLEASE ECORV 562 3.1.21.4 | Details
8 1RVC 3 A, B PROTEIN (ECO RV (E.C.3.1.21.4)) 562 3.1.21.4 | Details
9 1BSU 3 A, B ENDONUCLEASE ECORV (3.1.21.4) 562 3.1.21.4 | Details
10 1BGB 2 A, B ECORV ENDONUCLEASE 562 3.1.21.4 | Details
11 1AZ0 2 A, B PROTEIN (TYPE II RESTRICTION ENZYME ECORV) 562 3.1.21.4 | Details
12 1RVB 2 A, B PROTEIN (ECO RV (E.C.3.1.21.4)) 562 3.1.21.4 | Details
13 1EO4 2 A, B TYPE II RESTRICTION ENZYME ECORV 562 3.1.21.4 | Details
14 1B97 2 A, B RESTRICTION ENDONUCLEASE ECORV 562 3.1.21.4 | Details
15 1EO3 2 A, B TYPE II RESTRICTION ENZYME ECORV 562 3.1.21.4 | Details
16 2B0E 2 A, B Type II restriction enzyme EcoRV 562 3.1.21.4 | Details
17 1RV5 2 A, B ECORV ENDONUCLEASE 562 3.1.21.4 | Details
18 1B95 2 A, B RESTRICTION ENDONUCLEASE ECORV 562 3.1.21.4 | Details
19 1BSS 2 A, B ECORV ENDONUCLEASE 562 3.1.21.4 | Details
20 2B0D 2 A, B Type II restriction enzyme EcoRV 562 3.1.21.4 | Details
21 1STX 3 A, B Type II restriction enzyme EcoRV COMPLEXED WITH CLEAVED DNA DUPLEX 562 3.1.21.4 | Details
22 1BUA 2 A, B ENDONUCLEASE ECORV 562 3.1.21.4 | Details
23 1SX8 2 A, B Type II restriction enzyme EcoRV 562 3.1.21.4 | Details
24 1B96 2 A, B RESTRICTION ENDONUCLEASE ECORV 562 3.1.21.4 | Details
25 1EOO 2 A, B TYPE II RESTRICTION ENZYME ECORV 562 3.1.21.4 | Details
26 1RVE 1 A, B ENDONUCLEASE EcoR V 562 3.1.21.4 | Details
27 1EOP 2 A, B TYPE II RESTRICTION ENZYME ECORV 562 3.1.21.4 | Details
28 1AZ3 1 A, B ECORV ENDONUCLEASE 562 3.1.21.4 | Details
29 1AZ4 1 A, B ECORV ENDONUCLEASE 562 3.1.21.4 | Details
30 4RVE 2 A, B, C PROTEIN (ECO RV (E.C.3.1.21.4)) 562 3.1.21.4 | Details
31 2RVE 2 A, B PROTEIN (ECO RV (E.C.3.1.21.4)) 562 3.1.21.4 | Details