Sequence Similarity Clusters for the Entities in PDB 1EO8

Entity #1 | Chains: A
HEMAGGLUTININ (HA1 CHAIN) protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 13 1509
95 % 22 50 273 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 22 50 285
70 % 41 83 203
50 % 52 94 215
40 % 179 359 18
30 % 182 367 30
Entity #2 | Chains: B
HEMAGGLUTININ (HA2 CHAIN) protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 19 870
95 % 41 80 203 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 0.9
PDBFlex
90 % 41 80 211
70 % 89 164 80
50 % 178 360 10
40 % 183 371 16
30 % 187 377 29
Entity #3 | Chains: L
ANTIBODY (LIGHT CHAIN) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64584
95 % 1 1 52481
90 % 59 154 142
70 % 1650 2696 1
50 % 3364 5473 1
40 % 3816 6175 1
30 % 4695 7653 1
Entity #4 | Chains: H
ANTIBODY (HEAVY CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61809
95 % 1 1 50450
90 % 1 1 47810
70 % 1626 2655 2
50 % 3365 5473 1
40 % 3817 6175 1
30 % 4696 7653 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1EO8 4 H ANTIBODY (HEAVY CHAIN) FAB FRAGMENT OF ANTIBODY BH151 10090