Sequence Similarity Clusters for the Entities in PDB 1EO8

Entity #1 | Chains: A
HEMAGGLUTININ (HA1 CHAIN) protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 13 1510
95 % 22 50 273 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 22 50 285
70 % 41 83 203
50 % 52 94 215
40 % 179 359 18
30 % 182 367 31
Entity #2 | Chains: B
HEMAGGLUTININ (HA2 CHAIN) protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 19 870
95 % 41 80 203 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 0.9
PDBFlex
90 % 41 80 211
70 % 89 164 80
50 % 178 360 10
40 % 183 371 17
30 % 187 377 30
Entity #3 | Chains: L
ANTIBODY (LIGHT CHAIN) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64478
95 % 1 1 52397
90 % 59 154 142
70 % 1650 2696 1
50 % 3364 5473 1
40 % 3816 6175 1
30 % 4692 7645 1
Entity #4 | Chains: H
ANTIBODY (HEAVY CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61698
95 % 1 1 50366
90 % 1 1 47736
70 % 1626 2655 2
50 % 3365 5473 1
40 % 3817 6175 1
30 % 4693 7645 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2VIU 2 B HEMAGGLUTININ BROMELAIN DIGESTED 11309
2 2YPG 2 B, D, F HEMAGGLUTININ HA2 CHAIN HA2 OF BROMELAIN RELEASED ECTODOMAIN, RESIDUES 346-520 11320
3 1EO8 2 B HEMAGGLUTININ (HA2 CHAIN) A RECOMBINANT INFLUENZA STRAIN CONTAINING A/AICHI/68 (H3N2) HEMAGGLUTININ BROMELAIN RELEASED FRAGMENT 11320
4 1HGE 2 B, D, F HEMAGGLUTININ, (G135R), HA1 CHAIN 11320
5 1QFU 2 B PROTEIN (HEMAGGLUTININ (HA2 CHAIN)) BROMELAIN DIGESTED 11320
6 1HGJ 2 B, D, F HEMAGGLUTININ, CHAIN HA1 11320
7 1HGI 2 B, D, F HEMAGGLUTININ, CHAIN HA1 11320
8 1HGD 2 B, D, F HEMAGGLUTININ, CHAIN HA1 11320
9 1HGH 2 B, D, F HEMAGGLUTININ, CHAIN HA1 11320
10 1HGG 2 B, D, F HEMAGGLUTININ, CHAIN HA2 11320
11 3VUN 2 B, D, F Hemagglutinin HA2 chain 11320
12 2HMG 2 B, D, F HEMAGGLUTININ (HA2 CHAIN) 11320
13 3HMG 2 B, D, F HEMAGGLUTININ 11320
14 1HGF 2 B, D, F HEMAGGLUTININ, CHAIN HA1 11320
15 4HMG 2 B, D, F HEMAGGLUTININ, CHAIN HA1 11320
16 5HMG 2 B, D, F Hemagglutinin HA2 chain 11320
17 4UBD 2 B, F, J, N, R, V Hemagglutinin HA2 chain 11320
18 3ZTJ 2 B, D, F HEMAGGLUTININ HA2 CHAIN RESIDUES 346-520 11320
19 1KEN 2 B, D, F hemagglutinin HA2 BROMELAIN DIGESTED FAB fragment of antibody 11320