Sequence Similarity Clusters for the Entities in PDB 1EO8

Entity #1 | Chains: A
HEMAGGLUTININ (HA1 CHAIN) protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 13 1472
95 % 22 50 271 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 22 50 282
70 % 41 83 188
50 % 52 94 212
40 % 178 353 17
30 % 181 361 29
Entity #2 | Chains: B
HEMAGGLUTININ (HA2 CHAIN) protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 19 835
95 % 41 80 194 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 0.9
PDBFlex
90 % 41 80 202
70 % 87 159 80
50 % 176 353 10
40 % 180 363 15
30 % 184 369 28
Entity #3 | Chains: L
ANTIBODY (LIGHT CHAIN) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63586
95 % 1 1 51682
90 % 58 153 143
70 % 1621 2632 1
50 % 3305 5344 1
40 % 3751 6024 1
30 % 4623 7481 1
Entity #4 | Chains: H
ANTIBODY (HEAVY CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60832
95 % 1 1 49672
90 % 1 1 47116
70 % 1597 2591 2
50 % 3306 5344 1
40 % 3752 6024 1
30 % 4624 7481 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2VIU 2 B HEMAGGLUTININ BROMELAIN DIGESTED 11309
2 2YPG 2 B, D, F HEMAGGLUTININ HA2 CHAIN HA2 OF BROMELAIN RELEASED ECTODOMAIN, RESIDUES 346-520 11320
3 1EO8 2 B HEMAGGLUTININ (HA2 CHAIN) A RECOMBINANT INFLUENZA STRAIN CONTAINING A/AICHI/68 (H3N2) HEMAGGLUTININ BROMELAIN RELEASED FRAGMENT 11320
4 1HGE 2 B, D, F HEMAGGLUTININ, (G135R), HA1 CHAIN 11320
5 1QFU 2 B PROTEIN (HEMAGGLUTININ (HA2 CHAIN)) BROMELAIN DIGESTED 11320
6 1HGJ 2 B, D, F HEMAGGLUTININ, CHAIN HA1 11320
7 1HGI 2 B, D, F HEMAGGLUTININ, CHAIN HA1 11320
8 1HGD 2 B, D, F HEMAGGLUTININ, CHAIN HA1 11320
9 1HGH 2 B, D, F HEMAGGLUTININ, CHAIN HA1 11320
10 1HGG 2 B, D, F HEMAGGLUTININ, CHAIN HA2 11320
11 3VUN 2 B, D, F Hemagglutinin HA2 chain 11320
12 2HMG 2 B, D, F HEMAGGLUTININ (HA2 CHAIN) 11320
13 3HMG 2 B, D, F HEMAGGLUTININ 11320
14 1HGF 2 B, D, F HEMAGGLUTININ, CHAIN HA1 11320
15 4HMG 2 B, D, F HEMAGGLUTININ, CHAIN HA1 11320
16 5HMG 2 B, D, F Hemagglutinin HA2 chain 11320
17 4UBD 2 B, F, J, N, R, V Hemagglutinin HA2 chain 11320
18 3ZTJ 2 B, D, F HEMAGGLUTININ HA2 CHAIN RESIDUES 346-520 11320
19 1KEN 2 B, D, F hemagglutinin HA2 BROMELAIN DIGESTED FAB fragment of antibody 11320