Sequence Similarity Clusters for the Entities in PDB 1EO8

Entity #1 | Chains: A
HEMAGGLUTININ (HA1 CHAIN) protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 16 1122
95 % 22 51 279 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 22 52 282
70 % 41 85 206
50 % 52 97 220
40 % 180 365 19
30 % 183 374 31
Entity #2 | Chains: B
HEMAGGLUTININ (HA2 CHAIN) protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 19 897
95 % 41 82 204 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 0.9
PDBFlex
90 % 41 82 213
70 % 89 167 82
50 % 179 366 12
40 % 184 377 17
30 % 188 383 30
Entity #3 | Chains: L
ANTIBODY (LIGHT CHAIN) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65902
95 % 1 1 53506
90 % 59 156 147
70 % 1677 2765 1
50 % 3430 5625 1
40 % 3902 6382 1
30 % 4822 7934 1
Entity #4 | Chains: H
ANTIBODY (HEAVY CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63074
95 % 1 1 51450
90 % 1 1 48774
70 % 1657 2728 2
50 % 3431 5625 1
40 % 3903 6382 1
30 % 4823 7934 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2VIU 2 B HEMAGGLUTININ BROMELAIN DIGESTED 11309
2 2YPG 2 B, D, F HEMAGGLUTININ HA2 CHAIN HA2 OF BROMELAIN RELEASED ECTODOMAIN, RESIDUES 346-520 11320
3 1EO8 2 B HEMAGGLUTININ (HA2 CHAIN) A RECOMBINANT INFLUENZA STRAIN CONTAINING A/AICHI/68 (H3N2) HEMAGGLUTININ BROMELAIN RELEASED FRAGMENT 11320
4 1HGE 2 B, D, F HEMAGGLUTININ, (G135R), HA1 CHAIN 11320
5 1QFU 2 B PROTEIN (HEMAGGLUTININ (HA2 CHAIN)) BROMELAIN DIGESTED 11320
6 1HGJ 2 B, D, F HEMAGGLUTININ, CHAIN HA1 11320
7 1HGI 2 B, D, F HEMAGGLUTININ, CHAIN HA1 11320
8 1HGD 2 B, D, F HEMAGGLUTININ, CHAIN HA1 11320
9 1HGH 2 B, D, F HEMAGGLUTININ, CHAIN HA1 11320
10 1HGG 2 B, D, F HEMAGGLUTININ, CHAIN HA2 11320
11 3VUN 2 B, D, F Hemagglutinin HA2 chain 11320
12 2HMG 2 B, D, F HEMAGGLUTININ (HA2 CHAIN) 11320
13 3HMG 2 B, D, F HEMAGGLUTININ 11320
14 1HGF 2 B, D, F HEMAGGLUTININ, CHAIN HA1 11320
15 4HMG 2 B, D, F HEMAGGLUTININ, CHAIN HA1 11320
16 5HMG 2 B, D, F Hemagglutinin HA2 chain 11320
17 4UBD 2 B, F, J, N, R, V Hemagglutinin HA2 chain 11320
18 3ZTJ 2 B, D, F HEMAGGLUTININ HA2 CHAIN RESIDUES 346-520 11320
19 1KEN 2 B, D, F hemagglutinin HA2 BROMELAIN DIGESTED FAB fragment of antibody 11320