Sequence Similarity Clusters for the Entities in PDB 1EO8

Entity #1 | Chains: A
HEMAGGLUTININ (HA1 CHAIN) protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 13 1472
95 % 22 50 271 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 22 50 282
70 % 41 83 189
50 % 52 94 211
40 % 178 348 16
30 % 181 356 29
Entity #2 | Chains: B
HEMAGGLUTININ (HA2 CHAIN) protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 19 834
95 % 41 80 193 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 0.9
PDBFlex
90 % 41 80 201
70 % 87 159 80
50 % 176 340 11
40 % 180 350 17
30 % 184 356 30
Entity #3 | Chains: L
ANTIBODY (LIGHT CHAIN) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63361
95 % 1 1 51491
90 % 58 153 143
70 % 1616 2621 1
50 % 3296 5323 1
40 % 3742 6003 1
30 % 4614 7460 1
Entity #4 | Chains: H
ANTIBODY (HEAVY CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60621
95 % 1 1 49484
90 % 1 1 46933
70 % 1592 2580 2
50 % 3297 5323 1
40 % 3743 6003 1
30 % 4615 7460 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2YPG 1 A, C, E HEMAGGLUTININ HA1 CHAIN 11320
2 1EO8 1 A HEMAGGLUTININ (HA1 CHAIN) A RECOMBINANT INFLUENZA STRAIN CONTAINING A/AICHI/68 (H3N2) HEMAGGLUTININ BROMELAIN RELEASED FRAGMENT 11320
3 1HGE 1 A, C, E HEMAGGLUTININ, (G135R), HA1 CHAIN 11320
4 1QFU 1 A PROTEIN (HEMAGGLUTININ (HA1 CHAIN)) BROMELAIN DIGESTED 11320
5 1HGJ 1 A, C, E HEMAGGLUTININ, CHAIN HA1 11320
6 1HGI 1 A, C, E HEMAGGLUTININ, CHAIN HA1 11320
7 1HGD 1 A, C, E HEMAGGLUTININ, CHAIN HA1 11320
8 1HGH 1 A, C, E HEMAGGLUTININ, CHAIN HA1 11320
9 1HGG 1 A, C, E HEMAGGLUTININ, CHAIN HA1 11320
10 2HMG 1 A, C, E HEMAGGLUTININ (HA1 CHAIN) 11320
11 1HGF 1 A, C, E HEMAGGLUTININ, CHAIN HA1 11320
12 5HMG 1 A, C, E Hemagglutinin HA1 chain 11320
13 1KEN 1 A, C, E hemagglutinin HA1 11320