Sequence Similarity Clusters for the Entities in PDB 1EO8

Entity #1 | Chains: A
HEMAGGLUTININ (HA1 CHAIN) protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 13 1424
95 % 22 50 263 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 22 50 275
70 % 41 80 190
50 % 52 91 214
40 % 178 345 16
30 % 181 353 29
Entity #2 | Chains: B
HEMAGGLUTININ (HA2 CHAIN) protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 19 817
95 % 41 77 191 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 0.9
PDBFlex
90 % 41 77 199
70 % 87 156 77
50 % 176 337 11
40 % 180 347 17
30 % 184 353 31
Entity #3 | Chains: L
ANTIBODY (LIGHT CHAIN) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62276
95 % 1 1 50673
90 % 56 148 146
70 % 1573 2553 1
50 % 3203 5180 1
40 % 3640 5834 1
30 % 4502 7269 1
Entity #4 | Chains: H
ANTIBODY (HEAVY CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59547
95 % 1 1 48655
90 % 1 1 46192
70 % 1547 2511 2
50 % 3204 5180 1
40 % 3641 5834 1
30 % 4503 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2YPG 1 A, C, E HEMAGGLUTININ HA1 CHAIN 11320
2 1EO8 1 A HEMAGGLUTININ (HA1 CHAIN) A RECOMBINANT INFLUENZA STRAIN CONTAINING A/AICHI/68 (H3N2) HEMAGGLUTININ BROMELAIN RELEASED FRAGMENT 11320
3 1HGE 1 A, C, E HEMAGGLUTININ, (G135R), HA1 CHAIN 11320
4 1QFU 1 A PROTEIN (HEMAGGLUTININ (HA1 CHAIN)) BROMELAIN DIGESTED 11320
5 1HGJ 1 A, C, E HEMAGGLUTININ, CHAIN HA1 11320
6 1HGI 1 A, C, E HEMAGGLUTININ, CHAIN HA1 11320
7 1HGD 1 A, C, E HEMAGGLUTININ, CHAIN HA1 11320
8 1HGH 1 A, C, E HEMAGGLUTININ, CHAIN HA1 11320
9 1HGG 1 A, C, E HEMAGGLUTININ, CHAIN HA1 11320
10 2HMG 1 A, C, E HEMAGGLUTININ (HA1 CHAIN) 11320
11 1HGF 1 A, C, E HEMAGGLUTININ, CHAIN HA1 11320
12 5HMG 1 A, C, E Hemagglutinin HA1 chain 11320
13 1KEN 1 A, C, E hemagglutinin HA1 11320