Sequence Similarity Clusters for the Entities in PDB 1EO8

Entity #1 | Chains: A
HEMAGGLUTININ (HA1 CHAIN) protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 13 1510
95 % 22 50 275 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 22 50 287
70 % 41 83 203
50 % 52 94 215
40 % 179 359 18
30 % 182 367 31
Entity #2 | Chains: B
HEMAGGLUTININ (HA2 CHAIN) protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 19 873
95 % 41 80 207 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 0.9
PDBFlex
90 % 41 80 215
70 % 89 164 80
50 % 178 360 10
40 % 183 371 16
30 % 187 377 30
Entity #3 | Chains: L
ANTIBODY (LIGHT CHAIN) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64695
95 % 1 1 52563
90 % 59 154 142
70 % 1649 2700 1
50 % 3370 5489 1
40 % 3827 6196 1
30 % 4706 7674 1
Entity #4 | Chains: H
ANTIBODY (HEAVY CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61910
95 % 1 1 50528
90 % 1 1 47889
70 % 1629 2662 2
50 % 3371 5489 1
40 % 3828 6196 1
30 % 4707 7674 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2YPG 1 A, C, E HEMAGGLUTININ HA1 CHAIN 11320
2 1EO8 1 A HEMAGGLUTININ (HA1 CHAIN) A RECOMBINANT INFLUENZA STRAIN CONTAINING A/AICHI/68 (H3N2) HEMAGGLUTININ BROMELAIN RELEASED FRAGMENT 11320
3 1HGE 1 A, C, E HEMAGGLUTININ, (G135R), HA1 CHAIN 11320
4 1QFU 1 A PROTEIN (HEMAGGLUTININ (HA1 CHAIN)) BROMELAIN DIGESTED 11320
5 1HGJ 1 A, C, E HEMAGGLUTININ, CHAIN HA1 11320
6 1HGI 1 A, C, E HEMAGGLUTININ, CHAIN HA1 11320
7 1HGD 1 A, C, E HEMAGGLUTININ, CHAIN HA1 11320
8 1HGH 1 A, C, E HEMAGGLUTININ, CHAIN HA1 11320
9 1HGG 1 A, C, E HEMAGGLUTININ, CHAIN HA1 11320
10 2HMG 1 A, C, E HEMAGGLUTININ (HA1 CHAIN) 11320
11 1HGF 1 A, C, E HEMAGGLUTININ, CHAIN HA1 11320
12 5HMG 1 A, C, E Hemagglutinin HA1 chain 11320
13 1KEN 1 A, C, E hemagglutinin HA1 11320