Sequence Similarity Clusters for the Entities in PDB 1EO8

Entity #1 | Chains: A
HEMAGGLUTININ (HA1 CHAIN) protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 14 1405
95 % 22 51 273 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 22 52 279
70 % 49 94 179
50 % 60 106 192
40 % 188 374 14
30 % 188 374 21
Entity #2 | Chains: B
HEMAGGLUTININ (HA2 CHAIN) protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 18 974
95 % 42 70 243 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 0.9
PDBFlex
90 % 47 88 197
70 % 58 100 178
50 % 185 361 13
40 % 185 361 19
30 % 190 372 22
Entity #3 | Chains: L
ANTIBODY (LIGHT CHAIN) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73689
95 % 1 1 52476
90 % 54 135 168
70 % 1376 2240 2
50 % 1717 2825 2
40 % 1717 2825 2
30 % 3487 5727 1
Entity #4 | Chains: H
ANTIBODY (HEAVY CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73690
95 % 1 1 52477
90 % 1 1 49533
70 % 1666 2736 1
50 % 1748 2860 1
40 % 1748 2860 1
30 % 3488 5727 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures