Sequence Similarity Clusters for the Entities in PDB 1EO8

Entity #1 | Chains: A
HEMAGGLUTININ (HA1 CHAIN) protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 14 1403
95 % 20 48 285 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 22 52 279
70 % 43 88 180
50 % 54 100 197
40 % 182 368 14
30 % 182 368 22
Entity #2 | Chains: B
HEMAGGLUTININ (HA2 CHAIN) protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 18 962
95 % 36 64 250 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 0.9
PDBFlex
90 % 41 82 210
70 % 52 94 179
50 % 179 355 13
40 % 179 355 19
30 % 184 366 24
Entity #3 | Chains: L
ANTIBODY (LIGHT CHAIN) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 77061
95 % 1 1 52378
90 % 54 135 166
70 % 1375 2236 2
50 % 1716 2821 2
40 % 1716 2821 2
30 % 3485 5715 1
Entity #4 | Chains: H
ANTIBODY (HEAVY CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73426
95 % 1 1 52379
90 % 1 1 49497
70 % 1665 2735 1
50 % 1747 2852 1
40 % 1747 2852 1
30 % 3486 5715 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures