Sequence Similarity Clusters for the Entities in PDB 1EO8

Entity #1 | Chains: A
HEMAGGLUTININ (HA1 CHAIN) protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 13 1193
95 % 19 47 254 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 19 47 267
70 % 25 64 213
50 % 36 75 215
40 % 151 307 16
30 % 154 314 26
Entity #2 | Chains: B
HEMAGGLUTININ (HA2 CHAIN) protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 17 831
95 % 25 61 206 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 1.1
PDBFlex
90 % 25 61 216
70 % 71 139 77
50 % 151 305 11
40 % 155 315 15
30 % 155 315 27
Entity #3 | Chains: L
ANTIBODY (LIGHT CHAIN) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59737
95 % 1 1 41738
90 % 54 145 141
70 % 1394 2264 1
50 % 2835 4587 1
40 % 2835 4587 1
30 % 3282 5392 1
Entity #4 | Chains: H
ANTIBODY (HEAVY CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59021
95 % 1 1 41418
90 % 1 1 39480
70 % 1372 2222 2
50 % 2836 4587 1
40 % 2836 4587 1
30 % 3283 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.