Sequence Similarity Clusters for the Entities in PDB 1EO8

Entity #1 | Chains: A
HEMAGGLUTININ (HA1 CHAIN) protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 13 1282
95 % 22 50 258 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.6
PDBFlex
90 % 22 50 273
70 % 41 80 186
50 % 52 91 207
40 % 178 340 17
30 % 181 348 27
Entity #2 | Chains: B
HEMAGGLUTININ (HA2 CHAIN) protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 17 882
95 % 41 77 164 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.0
PDBFlex
90 % 41 77 175
70 % 87 155 76
50 % 176 335 10
40 % 180 345 16
30 % 180 345 28
Entity #3 | Chains: L
ANTIBODY (LIGHT CHAIN) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63149
95 % 1 1 44078
90 % 56 148 144
70 % 1538 2479 1
50 % 3124 5021 1
40 % 3124 5021 1
30 % 3661 5951 1
Entity #4 | Chains: H
ANTIBODY (HEAVY CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62371
95 % 1 1 43732
90 % 1 1 41589
70 % 1509 2429 2
50 % 3125 5021 1
40 % 3125 5021 1
30 % 3662 5951 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures