Sequence Similarity Clusters for the Entities in PDB 1EO8

Entity #1 | Chains: A
HEMAGGLUTININ (HA1 CHAIN) protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 13 1258
95 % 19 47 270 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.6
PDBFlex
90 % 19 47 284
70 % 32 71 203
50 % 43 82 217
40 % 168 330 17
30 % 171 338 27
Entity #2 | Chains: B
HEMAGGLUTININ (HA2 CHAIN) protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 17 871
95 % 32 68 210 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.0
PDBFlex
90 % 32 68 221
70 % 78 146 77
50 % 166 325 10
40 % 170 335 15
30 % 170 335 28
Entity #3 | Chains: L
ANTIBODY (LIGHT CHAIN) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62239
95 % 1 1 43468
90 % 56 148 140
70 % 1497 2416 1
50 % 3040 4892 1
40 % 3040 4892 1
30 % 3523 5759 1
Entity #4 | Chains: H
ANTIBODY (HEAVY CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61477
95 % 1 1 43130
90 % 1 1 41036
70 % 1468 2366 2
50 % 3041 4892 1
40 % 3041 4892 1
30 % 3524 5759 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures