Sequence Similarity Clusters for the Entities in PDB 1EO4

Entity #1 | Chains: C,D
DNA (5'-D(*CP*AP*AP*GP*AP*(TSP)P*AP*TP*CP*TP*T)-3') dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
TYPE II RESTRICTION ENZYME ECORV protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 30 700
95 % 13 31 842 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.8
PDBFlex
90 % 13 31 873
70 % 13 31 913
50 % 13 31 961
40 % 13 31 979
30 % 13 31 965

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1SX5 3 A, B Type II restriction enzyme EcoRV 562 3.1.21.4 | Details
2 5F8A 2 A, B Type-2 restriction enzyme EcoRV 562 3.1.21.4 | Details
3 1EON 3 A, B TYPE II RESTRICTION ENZYME ECORV 562 3.1.21.4 | Details
4 1SUZ 2 A, B Type II restriction enzyme EcoRV 562 3.1.21.4 | Details
5 1RVA 2 A, B PROTEIN (ECO RV (E.C.3.1.21.4)) 562 3.1.21.4 | Details
6 5HLK 1 A, B Type-2 restriction enzyme EcoRV 562 3.1.21.4 | Details
7 1B94 2 A, B RESTRICTION ENDONUCLEASE ECORV 562 3.1.21.4 | Details
8 1RVC 3 A, B PROTEIN (ECO RV (E.C.3.1.21.4)) 562 3.1.21.4 | Details
9 1BSU 3 A, B ENDONUCLEASE ECORV (3.1.21.4) 562 3.1.21.4 | Details
10 1BGB 2 A, B ECORV ENDONUCLEASE 562 3.1.21.4 | Details
11 1AZ0 2 A, B PROTEIN (TYPE II RESTRICTION ENZYME ECORV) 562 3.1.21.4 | Details
12 1RVB 2 A, B PROTEIN (ECO RV (E.C.3.1.21.4)) 562 3.1.21.4 | Details
13 1EO4 2 A, B TYPE II RESTRICTION ENZYME ECORV 562 3.1.21.4 | Details
14 1EO3 2 A, B TYPE II RESTRICTION ENZYME ECORV 562 3.1.21.4 | Details
15 2B0E 2 A, B Type II restriction enzyme EcoRV 562 3.1.21.4 | Details
16 1RV5 2 A, B ECORV ENDONUCLEASE 562 3.1.21.4 | Details
17 1B95 2 A, B RESTRICTION ENDONUCLEASE ECORV 562 3.1.21.4 | Details
18 1BSS 2 A, B ECORV ENDONUCLEASE 562 3.1.21.4 | Details
19 2B0D 2 A, B Type II restriction enzyme EcoRV 562 3.1.21.4 | Details
20 1STX 3 A, B Type II restriction enzyme EcoRV COMPLEXED WITH CLEAVED DNA DUPLEX 562 3.1.21.4 | Details
21 1BUA 2 A, B ENDONUCLEASE ECORV 562 3.1.21.4 | Details
22 1SX8 2 A, B Type II restriction enzyme EcoRV 562 3.1.21.4 | Details
23 1B96 2 A, B RESTRICTION ENDONUCLEASE ECORV 562 3.1.21.4 | Details
24 1EOO 2 A, B TYPE II RESTRICTION ENZYME ECORV 562 3.1.21.4 | Details
25 1RVE 1 A, B ENDONUCLEASE EcoR V 562 3.1.21.4 | Details
26 1EOP 2 A, B TYPE II RESTRICTION ENZYME ECORV 562 3.1.21.4 | Details
27 1AZ3 1 A, B ECORV ENDONUCLEASE 562 3.1.21.4 | Details
28 1AZ4 1 A, B ECORV ENDONUCLEASE 562 3.1.21.4 | Details
29 4RVE 2 A, B, C PROTEIN (ECO RV (E.C.3.1.21.4)) 562 3.1.21.4 | Details
30 2RVE 2 A, B PROTEIN (ECO RV (E.C.3.1.21.4)) 562 3.1.21.4 | Details