Sequence Similarity Clusters for the Entities in PDB 1EMV

Entity #1 | Chains: A
IMMUNITY PROTEIN IM9 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 15 2835
95 % 10 20 2286 Flexibility: No
Max RMSD: 1.8, Avg RMSD: 0.5
PDBFlex
90 % 10 20 2348
70 % 11 23 2123
50 % 13 39 1021
40 % 13 39 1028
30 % 13 39 1015
Entity #2 | Chains: B
COLICIN E9 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 15 2871
95 % 10 19 1932 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 10 19 1973
70 % 12 35 1006
50 % 14 38 886
40 % 14 38 911
30 % 14 38 897

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures