Sequence Similarity Clusters for the Entities in PDB 1EMV

Entity #1 | Chains: A
IMMUNITY PROTEIN IM9 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 10 4496
95 % 10 18 2758 Flexibility: No
Max RMSD: 1.8, Avg RMSD: 0.5
PDBFlex
90 % 10 20 2300
70 % 11 23 2027
50 % 13 39 984
40 % 13 39 1009
30 % 13 39 987
Entity #2 | Chains: B
COLICIN E9 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 11 3512
95 % 10 19 1835 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 10 19 1873
70 % 12 35 976
50 % 14 38 858
40 % 14 38 889
30 % 14 38 874

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures