Sequence Similarity Clusters for the Entities in PDB 1EMM

Entity #1 | Chains: A
GREEN FLUORESCENT PROTEIN protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27338
95 % 217 253 67 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.6
PDBFlex
90 % 229 293 37
70 % 234 299 31
50 % 235 301 79
40 % 244 314 96
30 % 420 529 14

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures