Sequence Similarity Clusters for the Entities in PDB 1EMI

Entity #1 | Chains: B
16S RIBOSOMAL RNA rna, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
RIBOSOMAL PROTEIN S8 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 270 272 33
95 % 270 272 46 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 274 276 47
70 % 274 276 58
50 % 430 432 29
40 % 436 438 40
30 % 560 562 32

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures