Sequence Similarity Clusters for the Entities in PDB 1EMC

Entity #1 | Chains: A,B,C,D
GREEN FLUORESCENT PROTEIN protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 11436
95 % 232 265 67 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.6
PDBFlex
90 % 246 307 23
70 % 249 311 30
50 % 250 313 78
40 % 260 326 90
30 % 444 546 15

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures