Sequence Similarity Clusters for the Entities in PDB 1EMC

Entity #1 | Chains: A,B,C,D
GREEN FLUORESCENT PROTEIN protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 10860
95 % 223 254 68 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.6
PDBFlex
90 % 235 294 37
70 % 240 300 33
50 % 241 302 79
40 % 251 315 95
30 % 430 530 15

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures