Sequence Similarity Clusters for the Entities in PDB 1EMB

Entity #1 | Chains: A
GREEN FLUORESCENT PROTEIN protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 9 5922
95 % 206 253 67 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.6
PDBFlex
90 % 217 293 37
70 % 221 298 31
50 % 222 299 77
40 % 230 312 90
30 % 379 523 17

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures