Sequence Similarity Clusters for the Entities in PDB 1EM9

Entity #1 | Chains: A,B
GAG POLYPROTEIN CAPSID PROTEIN P27 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44021
95 % 1 1 33254 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 31780
70 % 1 1 28334
50 % 1 1 24174
40 % 1 1 21261
30 % 1 1 18011

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures