Sequence Similarity Clusters for the Entities in PDB 1EM9

Entity #1 | Chains: A,B
GAG POLYPROTEIN CAPSID PROTEIN P27 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42336
95 % 1 1 31989 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 30618
70 % 1 1 27395
50 % 1 1 23429
40 % 1 1 20610
30 % 1 1 17455

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.