Sequence Similarity Clusters for the Entities in PDB 1EM9

Entity #1 | Chains: A,B
GAG POLYPROTEIN CAPSID PROTEIN P27 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44746
95 % 1 1 33740 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 32231
70 % 1 1 28725
50 % 1 1 24485
40 % 1 1 21537
30 % 1 1 18236

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures