Sequence Similarity Clusters for the Entities in PDB 1EM8

Entity #1 | Chains: A,C
DNA POLYMERASE III CHI SUBUNIT protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29158
95 % 2 2 24193 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 2 2 23387
70 % 2 2 21297
50 % 2 2 18431
40 % 2 2 16420
30 % 2 2 14050
Entity #2 | Chains: B,D
DNA POLYMERASE III PSI SUBUNIT protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47024
95 % 1 1 35198
90 % 1 1 33619
70 % 1 1 29889
50 % 1 1 25498
40 % 1 1 22457
30 % 1 1 19014

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures