Sequence Similarity Clusters for the Entities in PDB 1EM8

Entity #1 | Chains: A,C
DNA POLYMERASE III CHI SUBUNIT protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28027
95 % 2 2 23255 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 2 2 22502
70 % 2 2 20574
50 % 2 2 17840
40 % 2 2 15906
30 % 2 2 13606
Entity #2 | Chains: B,D
DNA POLYMERASE III PSI SUBUNIT protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 45362
95 % 1 1 33979
90 % 1 1 32497
70 % 1 1 28995
50 % 1 1 24784
40 % 1 1 21833
30 % 1 1 18481

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.