Sequence Similarity Clusters for the Entities in PDB 1EM8

Entity #1 | Chains: A,C
DNA POLYMERASE III CHI SUBUNIT protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29786
95 % 2 2 24685 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 2 2 23848
70 % 2 2 21694
50 % 2 2 18747
40 % 2 2 16694
30 % 2 2 14275
Entity #2 | Chains: B,D
DNA POLYMERASE III PSI SUBUNIT protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47974
95 % 1 1 35863
90 % 1 1 34232
70 % 1 1 30417
50 % 1 1 25913
40 % 1 1 22826
30 % 1 1 19313

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures