Sequence Similarity Clusters for the Entities in PDB 1EJW

Entity #1 | Chains: C
UREASE ALPHA SUBUNIT protein, length: 567 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 10 5904
95 % 5 31 1757 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 5 31 1791
70 % 5 31 1815
50 % 13 49 914
40 % 13 49 938
30 % 13 49 915
Entity #2 | Chains: B
UREASE BETA SUBUNIT protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 31 1328
95 % 5 31 1796 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.1
PDBFlex
90 % 5 31 1835
70 % 5 31 1858
50 % 5 31 1879
40 % 5 31 1886
30 % 5 31 1824
Entity #3 | Chains: A
UREASE GAMMA SUBUNIT protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 31 1330
95 % 5 31 1798 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 5 31 1837
70 % 13 44 1242
50 % 13 46 1060
40 % 13 46 1067
30 % 13 46 1045

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.