Sequence Similarity Clusters for the Entities in PDB 1EJS

Entity #1 | Chains: C
UREASE ALPHA SUBUNIT protein, length: 567 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 52564
95 % 17 31 1864 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 17 31 1904
70 % 17 31 1922
50 % 30 50 924
40 % 30 50 950
30 % 30 50 935
Entity #2 | Chains: B
UREASE BETA SUBUNIT protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 31 1413
95 % 17 31 1908 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.1
PDBFlex
90 % 17 31 1954
70 % 17 31 1968
50 % 17 31 1984
40 % 17 31 1982
30 % 17 31 1910
Entity #3 | Chains: A
UREASE GAMMA SUBUNIT protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 31 1415
95 % 17 31 1910 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 17 31 1956
70 % 30 45 1253
50 % 31 47 1080
40 % 31 47 1092
30 % 31 47 1073

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures