Sequence Similarity Clusters for the Entities in PDB 1EJO

Entity #1 | Chains: L
IGG2A MONOCLONAL ANTIBODY (LIGHT CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60406
95 % 20 39 767 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.4
PDBFlex
90 % 36 99 154
70 % 1225 2327 1
50 % 2502 4713 1
40 % 2502 4713 1
30 % 2868 5567 1
Entity #2 | Chains: H
IGG2A MONOCLONAL ANTIBODY (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59961
95 % 1 1 42150
90 % 5 15 2388
70 % 1214 2280 2
50 % 2503 4713 1
40 % 2503 4713 1
30 % 2869 5567 1
Entity #3 | Chains: P
FMDV PEPTIDE protein, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.