Sequence Similarity Clusters for the Entities in PDB 1EJO

Entity #1 | Chains: L
IGG2A MONOCLONAL ANTIBODY (LIGHT CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61257
95 % 20 39 786 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.4
PDBFlex
90 % 37 101 157
70 % 1268 2392 1
50 % 2588 4843 1
40 % 2588 4843 1
30 % 2961 5705 1
Entity #2 | Chains: H
IGG2A MONOCLONAL ANTIBODY (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60801
95 % 1 1 42727
90 % 5 15 2431
70 % 1255 2342 2
50 % 2589 4843 1
40 % 2589 4843 1
30 % 2962 5705 1
Entity #3 | Chains: P
FMDV PEPTIDE protein, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures