Sequence Similarity Clusters for the Entities in PDB 1EJO

Entity #1 | Chains: L
IGG2A MONOCLONAL ANTIBODY (LIGHT CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58759
95 % 20 39 754 Flexibility: Low
Max RMSD: 4.6, Avg RMSD: 1.5
PDBFlex
90 % 35 89 167
70 % 983 1841 2
50 % 2422 4537 1
40 % 2422 4537 1
30 % 2770 5342 1
Entity #2 | Chains: H
IGG2A MONOCLONAL ANTIBODY (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58331
95 % 1 1 40980
90 % 5 15 2313
70 % 1177 2197 1
50 % 2423 4537 1
40 % 2423 4537 1
30 % 2771 5342 1
Entity #3 | Chains: P
FMDV PEPTIDE protein, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.