Sequence Similarity Clusters for the Entities in PDB 1EJO

Entity #1 | Chains: L
IGG2A MONOCLONAL ANTIBODY (LIGHT CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62401
95 % 21 40 777 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.4
PDBFlex
90 % 40 105 152
70 % 1318 2474 1
50 % 2690 5011 1
40 % 2690 5011 1
30 % 3114 5941 1
Entity #2 | Chains: H
IGG2A MONOCLONAL ANTIBODY (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61935
95 % 1 1 43481
90 % 5 15 2500
70 % 1305 2424 2
50 % 2691 5011 1
40 % 2691 5011 1
30 % 3115 5941 1
Entity #3 | Chains: P
FMDV PEPTIDE protein, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures