Sequence Similarity Clusters for the Entities in PDB 1EJO

Entity #1 | Chains: L
IGG2A MONOCLONAL ANTIBODY (LIGHT CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63454
95 % 21 40 785 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.4
PDBFlex
90 % 41 109 148
70 % 1350 2553 1
50 % 2763 5180 1
40 % 3158 5834 1
30 % 3874 7269 1
Entity #2 | Chains: H
IGG2A MONOCLONAL ANTIBODY (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63455
95 % 1 1 51572
90 % 5 16 2334
70 % 1340 2511 2
50 % 2764 5180 1
40 % 3159 5834 1
30 % 3875 7269 1
Entity #3 | Chains: P
FMDV PEPTIDE protein, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures