Sequence Similarity Clusters for the Entities in PDB 1EJM

Entity #1 | Chains: A,C,E
BETA-TRYPSIN protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 356 412 39
95 % 399 471 18 Flexibility: No
Max RMSD: 3.0, Avg RMSD: 0.5
PDBFlex
90 % 399 471 20
70 % 445 557 19
50 % 498 708 14
40 % 1045 1863 4
30 % 1052 1885 6
Entity #2 | Chains: B,D,F
PANCREATIC TRYPSIN INHIBITOR protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31040
95 % 57 90 260 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 62 95 264
70 % 77 115 179
50 % 87 149 187
40 % 89 163 182
30 % 89 163 194

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures