Sequence Similarity Clusters for the Entities in PDB 1EJ9

Entity #1 | Chains: C
DNA (5'-D(*C*AP*AP*AP*AP*AP*GP*AP*CP*TP*CP*AP*GP*AP*AP*AP*AP*AP*TP*TP*TP*TP*T)-3') dna, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
DNA (5'-D(*C*AP*AP*AP*AP*AP*TP*TP*TP*TP*TP*CP*TP*GP*AP*GP*TP*CP*TP*TP*TP*TP*T)-3') dna, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
DNA TOPOISOMERASE I protein, length: 563 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51142
95 % 4 15 4322 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 4 15 4354
70 % 4 15 4274
50 % 4 15 4105
40 % 4 15 3933
30 % 4 15 3646

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1K4T 4 A DNA topoisomerase I Core Domain and C-Terminal Domain, Residues 174-765 9606 5.99.1.2 | Details
2 1A31 3 A PROTEIN (TOPOISOMERASE I) CORE DOMAIN AND C-TERMINAL DOMAIN 9606 5.99.1.2 | Details
3 1A35 3 A PROTEIN (DNA TOPOISOMERASE I) CORE DOMAIN AND C-TERMINAL DOMAIN 9606 5.99.1.2 | Details
4 1EJ9 3 A DNA TOPOISOMERASE I C-TERMINAL DOMAIN, RESIDUES 203-765 9606 5.99.1.2 | Details
5 1RRJ 3 A DNA topoisomerase I 9606 5.99.1.2 | Details
6 1A36 3 A TOPOISOMERASE I CORE DOMAIN AND C-TERMINAL DOMAIN 9606 5.99.1.2 | Details
7 1SC7 4 A DNA topoisomerase I 9606 5.99.1.2 | Details
8 1SEU 4 A DNA topoisomerase I 9606 5.99.1.2 | Details
9 1K4S 4 A DNA topoisomerase I Core Domain and C-Terminal Domain, Residues 174-765 9606 5.99.1.2 | Details
10 1TL8 4 A DNA topoisomerase I 9606 5.99.1.2 | Details
11 1RR8 3 C DNA topoisomerase I 9606 5.99.1.2 | Details
12 1T8I 4 A DNA topoisomerase I 9606 5.99.1.2 | Details
13 1NH3 4 A DNA topoisomerase I Core Subdomain, C-Terminal Domain 9606 5.99.1.2 | Details
14 1LPQ 3 A DNA topoisomerase I 9606 5.99.1.2 | Details
15 1R49 3 A DNA topoisomerase I Topo70 9606 5.99.1.2 | Details