Sequence Similarity Clusters for the Entities in PDB 1EJ9

Entity #1 | Chains: C
DNA (5'-D(*C*AP*AP*AP*AP*AP*GP*AP*CP*TP*CP*AP*GP*AP*AP*AP*AP*AP*TP*TP*TP*TP*T)-3') dna, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
DNA (5'-D(*C*AP*AP*AP*AP*AP*TP*TP*TP*TP*TP*CP*TP*GP*AP*GP*TP*CP*TP*TP*TP*TP*T)-3') dna, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
DNA TOPOISOMERASE I protein, length: 563 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51216
95 % 4 15 4330 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 4 15 4361
70 % 4 15 4281
50 % 4 15 4110
40 % 4 15 3938
30 % 4 15 3652

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1K4T 4 A DNA topoisomerase I Core Domain and C-Terminal Domain, Residues 174-765 9606 5.99.1.2 | Details
2 1A31 3 A PROTEIN (TOPOISOMERASE I) CORE DOMAIN AND C-TERMINAL DOMAIN 9606 5.99.1.2 | Details
3 1A35 3 A PROTEIN (DNA TOPOISOMERASE I) CORE DOMAIN AND C-TERMINAL DOMAIN 9606 5.99.1.2 | Details
4 1EJ9 3 A DNA TOPOISOMERASE I C-TERMINAL DOMAIN, RESIDUES 203-765 9606 5.99.1.2 | Details
5 1RRJ 3 A DNA topoisomerase I 9606 5.99.1.2 | Details
6 1A36 3 A TOPOISOMERASE I CORE DOMAIN AND C-TERMINAL DOMAIN 9606 5.99.1.2 | Details
7 1SC7 4 A DNA topoisomerase I 9606 5.99.1.2 | Details
8 1SEU 4 A DNA topoisomerase I 9606 5.99.1.2 | Details
9 1K4S 4 A DNA topoisomerase I Core Domain and C-Terminal Domain, Residues 174-765 9606 5.99.1.2 | Details
10 1TL8 4 A DNA topoisomerase I 9606 5.99.1.2 | Details
11 1RR8 3 C DNA topoisomerase I 9606 5.99.1.2 | Details
12 1T8I 4 A DNA topoisomerase I 9606 5.99.1.2 | Details
13 1NH3 4 A DNA topoisomerase I Core Subdomain, C-Terminal Domain 9606 5.99.1.2 | Details
14 1LPQ 3 A DNA topoisomerase I 9606 5.99.1.2 | Details
15 1R49 3 A DNA topoisomerase I Topo70 9606 5.99.1.2 | Details