Sequence Similarity Clusters for the Entities in PDB 1EJ7

Entity #1 | Chains: L
RUBISCO (LARGE SUBUNIT) protein, length: 475 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 52643
95 % 2 5 7638 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.4
PDBFlex
90 % 20 34 170
70 % 22 42 104
50 % 25 49 131
40 % 28 58 124
30 % 41 88 93
Entity #2 | Chains: S
RUBISCO (SMALL SUBUNIT) protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 16099
95 % 2 5 8097 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 5 8040
70 % 9 20 629
50 % 19 33 245
40 % 21 38 226
30 % 21 38 238

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1WDD 2 S, W Ribulose bisphosphate carboxylase small chain C 4530 4.1.1.39 | Details
2 1GK8 2 I, K, M, O RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1 3055 4.1.1.39 | Details
3 2V6A 2 I, J, K, L, M, N, O, P RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1 3055 4.1.1.39 | Details
4 3AXM 2 S, T, U, V, W, X, Y, Z Ribulose bisphosphate carboxylase small chain, chloroplastic 4530 4.1.1.39 | Details
5 8RUC 2 I, J, K, L RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE 3562 4.1.1.39 | Details
6 1IR1 2 S, T, U, V Small subunit of Rubisco 3562 4.1.1.39 | Details
7 1IR2 2 1, 2, 3, 4, 5, 6, 7, 8, I, J, K, L, M, N, O, P Small subunit of Rubisco 3055 4.1.1.39 | Details
8 2V63 2 I, J, K, L, M, N, O, P RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1 3055 4.1.1.39 | Details
9 3AXK 2 S, T Ribulose bisphosphate carboxylase small chain, chloroplastic 4530 4.1.1.39 | Details
10 1UW9 2 C, F, I, J, M, P, T, W RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1 3055 4.1.1.39 | Details
11 3RUB 2 S RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE, FORM III 4097 4.1.1.39 | Details
12 2V67 2 I, J, K, L, M, N, O, P RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1 RESIDUES 46-185 3055 4.1.1.39 | Details
13 4MKV 2 S, T, U, V Ribulose bisphosphate carboxylase small chain 3A, chloroplastic UNP residues 58-180 3888 4.1.1.39 | Details
14 1UZH 2 C, F, I, J, M, P, T, W RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 2, RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN LOOP BA-BB OF SMALL SUBUNIT CHLAMYDOMONAS RUBISCO, RESIDUES E47 - R71 HAS BEEN REPLACED WITH THE CORRESPONDING LOOP OF SYNECHOCOCCUSS, RESIDUES H47 - F53 269084 4.1.1.39 | Details
15 1RBO 2 C, F, I, S RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE 3562 4.1.1.39 | Details
16 2VDH 2 I, J, K, L, M, N, O, P RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1 3055 4.1.1.39 | Details
17 1UWA 2 C, F, I, J, M, P, T, W RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1 3055 4.1.1.39 | Details
18 2V68 2 I, J, K, L, M, N, O, P RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1 RESIDUES 46-185 3055 4.1.1.39 | Details
19 1EJ7 2 S RUBISCO (SMALL SUBUNIT) 4097 4.1.1.39 | Details
20 4HHH 2 S, T, U, V Ribulose bisphosphate carboxylase small chain 3888 4.1.1.39 | Details
21 1RXO 2 C, F, I, S RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE 3562 4.1.1.39 | Details
22 1AA1 2 C, F, I, S RIBULOSE BISPHOSPHATE CARBOXYLASE (SMALL CHAIN) 3562 4.1.1.39 | Details
23 1AUS 2 S, T, U, V RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE 3562 4.1.1.39 | Details
24 1UZD 2 C, F, I, J, M, P, T, W RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 2 ONE LOOP OF CHLAMYDOMONAS RUBISCO, RESIDUES GLU46-ASN70 HAS BEEN REPLACED WITH THE CORRESPONDING LOOP FROM SPINACH RUBISCO, RESIDUES THR46 - GLY64 3562 4.1.1.39 | Details
25 1UPM 2 C, F, I, M, P, S, T, W RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN THE COMPLETE STRUCTURE HAS BEEN SUBMITTED AS WELL AS THE MATRIX TRANSFORMATION FOR EACH CHAIN. 3562 4.1.1.39 | Details
26 1RCO 2 C, F, I, M, P, S, T, W RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE 3562 4.1.1.39 | Details
27 1RCX 2 C, F, I, M, P, S, T, W RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE 3562 4.1.1.39 | Details
28 1RLD 2 S, T RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (SMALL CHAIN) 4097 4.1.1.39 | Details
29 1UPP 2 I, J, K, L RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN THIS IS THE SECOND STRUCTURE OF THIS COMPLEX THAT IS BEING SUBMITTED. THE PREVOUS STRUCTURE, PDB ID CODE 1UPM, WAS OBTAINED FROM A CRYSTAL OF RUBISCO-CA COOCRYSTALLIZED WITH 2-CABP WHERAS THIS STRUCTURE IS FROM A RUBISCO-CA/3PGA CRYSTAL WHICH WAS SOAKED WITH 2-CABP 3562 4.1.1.39 | Details
30 1RLC 2 S RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (SMALL CHAIN) 4097 4.1.1.39 | Details
31 2VDI 2 I, J, K, L, M, N, O, P RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1 3055 4.1.1.39 | Details
32 4RUB 2 S, T, U, V RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (FORM IV) 4097 4.1.1.39 | Details
33 2V69 2 I, J, K, L, M, N, O, P RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1 3055 4.1.1.39 | Details