Sequence Similarity Clusters for the Entities in PDB 1EJ7

Entity #1 | Chains: L
RUBISCO (LARGE SUBUNIT) protein, length: 475 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58124
95 % 2 5 7897 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.4
PDBFlex
90 % 21 35 194
70 % 23 43 122
50 % 28 52 125
40 % 31 61 124
30 % 44 91 102
Entity #2 | Chains: S
RUBISCO (SMALL SUBUNIT) protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 8248
95 % 2 5 8305 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 5 8227
70 % 9 20 660
50 % 19 33 256
40 % 21 38 241
30 % 21 38 258

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1WDD 2 S, W Ribulose bisphosphate carboxylase small chain C 4530 4.1.1.39 | Details
2 1GK8 2 I, K, M, O RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1 3055 4.1.1.39 | Details
3 2V6A 2 I, J, K, L, M, N, O, P RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1 3055 4.1.1.39 | Details
4 3AXM 2 S, T, U, V, W, X, Y, Z Ribulose bisphosphate carboxylase small chain, chloroplastic 4530 4.1.1.39 | Details
5 8RUC 2 I, J, K, L RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE 3562 4.1.1.39 | Details
6 1SVD 2 M Ribulose bisphosphate carboxylase small chain 927 4.1.1.39 | Details
7 1IR1 2 S, T, U, V Small subunit of Rubisco 3562 4.1.1.39 | Details
8 1IR2 2 1, 2, 3, 4, 5, 6, 7, 8, I, J, K, L, M, N, O, P Small subunit of Rubisco 3055 4.1.1.39 | Details
9 2V63 2 I, J, K, L, M, N, O, P RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1 3055 4.1.1.39 | Details
10 3AXK 2 S, T Ribulose bisphosphate carboxylase small chain, chloroplastic 4530 4.1.1.39 | Details
11 1UW9 2 C, F, I, J, M, P, T, W RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1 3055 4.1.1.39 | Details
12 3RUB 2 S RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE, FORM III 4097 4.1.1.39 | Details
13 2V67 2 I, J, K, L, M, N, O, P RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1 RESIDUES 46-185 3055 4.1.1.39 | Details
14 4MKV 2 S, T, U, V Ribulose bisphosphate carboxylase small chain 3A, chloroplastic UNP residues 58-180 3888 4.1.1.39 | Details
15 3ZXW 2 B, D, F, H RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 146786 4.1.1.39 | Details
16 1UZH 2 C, F, I, J, M, P, T, W RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 2, RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN LOOP BA-BB OF SMALL SUBUNIT CHLAMYDOMONAS RUBISCO, RESIDUES E47 - R71 HAS BEEN REPLACED WITH THE CORRESPONDING LOOP OF SYNECHOCOCCUSS, RESIDUES H47 - F53 269084 4.1.1.39 | Details
17 1RBO 2 C, F, I, S RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE 3562 4.1.1.39 | Details
18 2VDH 2 I, J, K, L, M, N, O, P RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1 3055 4.1.1.39 | Details
19 1UWA 2 C, F, I, J, M, P, T, W RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1 3055 4.1.1.39 | Details
20 2V68 2 I, J, K, L, M, N, O, P RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1 RESIDUES 46-185 3055 4.1.1.39 | Details
21 1EJ7 2 S RUBISCO (SMALL SUBUNIT) 4097 4.1.1.39 | Details
22 1RBL 2 I, J, K, L, M, N, O, P RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (SMALL CHAIN) 32046 4.1.1.39 | Details
23 4HHH 2 S, T, U, V Ribulose bisphosphate carboxylase small chain 3888 4.1.1.39 | Details
24 1RXO 2 C, F, I, S RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE 3562 4.1.1.39 | Details
25 1AA1 2 C, F, I, S RIBULOSE BISPHOSPHATE CARBOXYLASE (SMALL CHAIN) 3562 4.1.1.39 | Details
26 1AUS 2 S, T, U, V RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE 3562 4.1.1.39 | Details
27 2YBV 2 B, D, F, H, J, L, N, P RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL SUBUNIT 146786 4.1.1.39 | Details
28 1UZD 2 C, F, I, J, M, P, T, W RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 2 ONE LOOP OF CHLAMYDOMONAS RUBISCO, RESIDUES GLU46-ASN70 HAS BEEN REPLACED WITH THE CORRESPONDING LOOP FROM SPINACH RUBISCO, RESIDUES THR46 - GLY64 3562 4.1.1.39 | Details
29 1UPM 2 C, F, I, M, P, S, T, W RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN THE COMPLETE STRUCTURE HAS BEEN SUBMITTED AS WELL AS THE MATRIX TRANSFORMATION FOR EACH CHAIN. 3562 4.1.1.39 | Details
30 1RCO 2 C, F, I, M, P, S, T, W RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE 3562 4.1.1.39 | Details
31 1RCX 2 C, F, I, M, P, S, T, W RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE 3562 4.1.1.39 | Details
32 1RLD 2 S, T RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (SMALL CHAIN) 4097 4.1.1.39 | Details
33 1RSC 2 I, J, K, L, M, N, O, P RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (SMALL CHAIN) 32046 4.1.1.39 | Details
34 1UPP 2 I, J, K, L RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN THIS IS THE SECOND STRUCTURE OF THIS COMPLEX THAT IS BEING SUBMITTED. THE PREVOUS STRUCTURE, PDB ID CODE 1UPM, WAS OBTAINED FROM A CRYSTAL OF RUBISCO-CA COOCRYSTALLIZED WITH 2-CABP WHERAS THIS STRUCTURE IS FROM A RUBISCO-CA/3PGA CRYSTAL WHICH WAS SOAKED WITH 2-CABP 3562 4.1.1.39 | Details
35 1RLC 2 S RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (SMALL CHAIN) 4097 4.1.1.39 | Details
36 2VDI 2 I, J, K, L, M, N, O, P RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1 3055 4.1.1.39 | Details
37 4RUB 2 S, T, U, V RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (FORM IV) 4097 4.1.1.39 | Details
38 2V69 2 I, J, K, L, M, N, O, P RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1 3055 4.1.1.39 | Details