Sequence Similarity Clusters for the Entities in PDB 1EJ7

Entity #1 | Chains: L
RUBISCO (LARGE SUBUNIT) protein, length: 475 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60447
95 % 2 5 8303 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.4
PDBFlex
90 % 21 35 222
70 % 23 43 132
50 % 30 55 129
40 % 33 64 124
30 % 46 94 106
Entity #2 | Chains: S
RUBISCO (SMALL SUBUNIT) protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 8685
95 % 2 5 8732 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 5 8653
70 % 9 20 699
50 % 19 33 278
40 % 21 38 257
30 % 21 38 272

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3RUB 2 S RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE, FORM III 4097 4.1.1.39 | Details
2 1EJ7 2 S RUBISCO (SMALL SUBUNIT) 4097 4.1.1.39 | Details
3 1RLD 2 S, T RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (SMALL CHAIN) 4097 4.1.1.39 | Details
4 1RLC 2 S RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (SMALL CHAIN) 4097 4.1.1.39 | Details
5 4RUB 2 S, T, U, V RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (FORM IV) 4097 4.1.1.39 | Details