Sequence Similarity Clusters for the Entities in PDB 1EJ7

Entity #1 | Chains: L
RUBISCO (LARGE SUBUNIT) protein, length: 475 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56771
95 % 2 5 7683 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.4
PDBFlex
90 % 20 34 174
70 % 22 42 137
50 % 25 49 147
40 % 28 58 137
30 % 41 88 111
Entity #2 | Chains: S
RUBISCO (SMALL SUBUNIT) protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 7996
95 % 2 5 8065 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 5 7997
70 % 9 20 641
50 % 19 33 244
40 % 21 38 233
30 % 21 38 250

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3RUB 1 L RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE, FORM III 4097 4.1.1.39 | Details
2 1EJ7 1 L RUBISCO (LARGE SUBUNIT) 4097 4.1.1.39 | Details
3 1RLD 1 A, B RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (LARGE CHAIN) 4097 4.1.1.39 | Details
4 1RLC 1 L RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (LARGE CHAIN) 4097 4.1.1.39 | Details
5 4RUB 1 A, B, C, D RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (FORM IV) 4097 4.1.1.39 | Details