Sequence Similarity Clusters for the Entities in PDB 1EJ7

Entity #1 | Chains: L
RUBISCO (LARGE SUBUNIT) protein, length: 475 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56771
95 % 2 5 7683 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.4
PDBFlex
90 % 20 34 174
70 % 22 42 137
50 % 25 49 147
40 % 28 58 137
30 % 41 88 111
Entity #2 | Chains: S
RUBISCO (SMALL SUBUNIT) protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 7996
95 % 2 5 8065 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 5 7997
70 % 9 20 641
50 % 19 33 244
40 % 21 38 233
30 % 21 38 250

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1WDD 1 A, E Ribulose bisphosphate carboxylase large chain 4530 4.1.1.39 | Details
2 1GK8 1 A, C, E, G RIBULOSE-1,5 BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
3 5IU0 1 A, B Ribulose bisphosphate carboxylase large chain 3702 4.1.1.39 | Details
4 2V6A 1 A, B, C, D, E, F, G, H RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
5 3AXM 1 A, B, C, D, E, F, G, H Ribulose bisphosphate carboxylase large chain 4530 4.1.1.39 | Details
6 8RUC 1 A, C, E, G RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE 3562 4.1.1.39 | Details
7 1SVD 1 A ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 927 4.1.1.39 | Details
8 1IR1 1 A, B, C, D Large subunit of Rubisco 3562 4.1.1.39 | Details
9 1IR2 1 A, B, C, D, E, F, G, H, S, T, U, V, W, X, Y, Z Large subunit of Rubisco 3055 4.1.1.39 | Details
10 2V63 1 A, B, C, D, E, F, G, H RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
11 3AXK 1 A, B Ribulose bisphosphate carboxylase large chain 4530 4.1.1.39 | Details
12 4F0H 1 A Ribulose bisphosphate carboxylase large chain 130081 4.1.1.39 | Details
13 1UW9 1 A, B, E, H, K, O, R, V RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
14 3RUB 1 L RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE, FORM III 4097 4.1.1.39 | Details
15 2V67 1 A, B, C, D, E, F, G, H RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
16 4F0K 1 A Ribulose bisphosphate carboxylase large chain 130081 4.1.1.39 | Details
17 4MKV 1 A, B, C, D Ribulose bisphosphate carboxylase large chain UNP residues 12-469 3888 4.1.1.39 | Details
18 3ZXW 1 A, C, E, G RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 146786 4.1.1.39 | Details
19 1UZH 1 A, B, E, H, K, O, R, V RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
20 4F0M 1 A Ribulose bisphosphate carboxylase large chain 130081 4.1.1.39 | Details
21 1RBO 1 B, E, H, L RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE 3562 4.1.1.39 | Details
22 2VDH 1 A, B, C, D, E, F, G, H RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
23 1UWA 1 A, B, E, H, K, O, R, V RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
24 2V68 1 A, B, C, D, E, F, G, H RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
25 1EJ7 1 L RUBISCO (LARGE SUBUNIT) 4097 4.1.1.39 | Details
26 1RBL 1 A, B, C, D, E, F, G, H RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (LARGE CHAIN) 32046 4.1.1.39 | Details
27 1BWV 1 A, C, E, G PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE) THE ENZYME IS COMPLEXED WITH CARBON DIOXIDE, MG2+ AND REACTION INTERMEDIATE ANALOGUE, 2-CARBOXYARABINITOL 1,5-BISPHOSPHATE. RESIDUE 201, KCX, OF THE LARGE SUBUNIT IS A LYS CARBAMYLATED AT THE EPSILON-AMINO GROUP 83374 4.1.1.39 | Details
28 4HHH 1 A, B, C, D Ribulose bisphosphate carboxylase large chain 3888 4.1.1.39 | Details
29 1RXO 1 B, E, H, L RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE 3562 4.1.1.39 | Details
30 1AA1 1 B, E, H, L RIBULOSE BISPHOSPHATE CARBOXYLASE (LARGE CHAIN) 3562 4.1.1.39 | Details
31 1AUS 1 L, M, N, O RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE 3562 4.1.1.39 | Details
32 2YBV 1 A, C, E, G, I, K, M, O RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 146786 4.1.1.39 | Details
33 1UZD 1 A, B, E, H, K, O, R, V RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
34 1IWA 1 A, C, E, G, I, K, M, O ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 83374 4.1.1.39 | Details
35 1UPM 1 B, E, H, K, L, O, R, V RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3562 4.1.1.39 | Details
36 1RCO 1 B, E, H, K, L, O, R, V RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE 3562 4.1.1.39 | Details
37 1RCX 1 B, E, H, K, L, O, R, V RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE 3562 4.1.1.39 | Details
38 1RLD 1 A, B RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (LARGE CHAIN) 4097 4.1.1.39 | Details
39 1RSC 1 A, B, C, D, E, F, G, H RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (LARGE CHAIN) 32046 4.1.1.39 | Details
40 1UPP 1 A, C, E, G RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3562 4.1.1.39 | Details
41 1RLC 1 L RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (LARGE CHAIN) 4097 4.1.1.39 | Details
42 2VDI 1 A, B, C, D, E, F, G, H RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
43 4RUB 1 A, B, C, D RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (FORM IV) 4097 4.1.1.39 | Details
44 2V69 1 A, B, C, D, E, F, G, H RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
45 6EKC 1 A1, A2, A3, A4, A5, A6, A7, A8, C1, C2, C3, C4, C5, C6, C7, C8, E1, E2, E3, E4, E5, E6, E7, E8, G1, G2, G3, G4, G5, G6, G7, G8, I1, I2, I3, I4, I5, I6, I7, I8, K1, K2, K3, K4, K5, K6, K7, K8, M1, M2, M3, M4, M5, M6, M7, M8, O1, O2, O3, O4, O5, O6, O7, O8, Q1, Q2, Q3, Q4, Q5, Q6, Q7, Q8, S1, S2, S3, S4, S5, S6, S7, S8 Ribulose bisphosphate carboxylase large chain RbcL 146786 4.1.1.39 | Details
46 1BXN 1 A, C, E, G PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN) 106590 4.1.1.39 | Details
47 3RG6 1 A, B Ribulose bisphosphate carboxylase large chain 32046 4.1.1.39 | Details
48 5NV3 1 A, B, C, D, E, F, G, H Ribulose bisphosphate carboxylase large chain RbcL 1063 4.1.1.39 | Details
49 2WVW 1 A, B, C, D, E, F, G, H RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 32046 4.1.1.39 | Details