Sequence Similarity Clusters for the Entities in PDB 1EJ7

Entity #1 | Chains: L
RUBISCO (LARGE SUBUNIT) protein, length: 475 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60047
95 % 2 5 8211 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.4
PDBFlex
90 % 21 35 222
70 % 23 43 132
50 % 30 55 126
40 % 33 64 124
30 % 46 94 105
Entity #2 | Chains: S
RUBISCO (SMALL SUBUNIT) protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 8591
95 % 2 5 8637 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 5 8559
70 % 9 20 679
50 % 19 33 274
40 % 21 38 255
30 % 21 38 269

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1WDD 1 A, E Ribulose bisphosphate carboxylase large chain 4530 4.1.1.39 | Details
2 1GK8 1 A, C, E, G RIBULOSE-1,5 BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
3 5IU0 1 A, B Ribulose bisphosphate carboxylase large chain 3702 4.1.1.39 | Details
4 2V6A 1 A, B, C, D, E, F, G, H RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
5 3AXM 1 A, B, C, D, E, F, G, H Ribulose bisphosphate carboxylase large chain 4530 4.1.1.39 | Details
6 8RUC 1 A, C, E, G RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE 3562 4.1.1.39 | Details
7 1SVD 1 A ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 927 4.1.1.39 | Details
8 5WSK 1 A, B, C, D Ribulose bisphosphate carboxylase large chain 4565 4.1.1.39 | Details
9 1IR1 1 A, B, C, D Large subunit of Rubisco 3562 4.1.1.39 | Details
10 1IR2 1 A, B, C, D, E, F, G, H, S, T, U, V, W, X, Y, Z Large subunit of Rubisco 3055 4.1.1.39 | Details
11 5OYA 1 A, B, D, E, F, G, H Rubisco large subunit 163503
12 5OYA 2 C Rubisco large subunit 163503
13 5MZ2 1 A, B, C, D, E, F, G, H Rubisco large subunit 160265
14 5N9Z 1 A, B, C, D, E, F, G, H Ribulose bisphosphate carboxylase large chain 1234817 4.1.1.39 | Details
15 2V63 1 A, B, C, D, E, F, G, H RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
16 3AXK 1 A, B Ribulose bisphosphate carboxylase large chain 4530 4.1.1.39 | Details
17 4F0H 1 A Ribulose bisphosphate carboxylase large chain 130081 4.1.1.39 | Details
18 1UW9 1 A, B, E, H, K, O, R, V RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
19 3RUB 1 L RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE, FORM III 4097 4.1.1.39 | Details
20 2V67 1 A, B, C, D, E, F, G, H RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
21 4F0K 1 A Ribulose bisphosphate carboxylase large chain 130081 4.1.1.39 | Details
22 4MKV 1 A, B, C, D Ribulose bisphosphate carboxylase large chain UNP residues 12-469 3888 4.1.1.39 | Details
23 3ZXW 1 A, C, E, G RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 146786 4.1.1.39 | Details
24 1UZH 1 A, B, E, H, K, O, R, V RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
25 4F0M 1 A Ribulose bisphosphate carboxylase large chain 130081 4.1.1.39 | Details
26 1RBO 1 B, E, H, L RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE 3562 4.1.1.39 | Details
27 2VDH 1 A, B, C, D, E, F, G, H RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
28 1UWA 1 A, B, E, H, K, O, R, V RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
29 2V68 1 A, B, C, D, E, F, G, H RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
30 1EJ7 1 L RUBISCO (LARGE SUBUNIT) 4097 4.1.1.39 | Details
31 1RBL 1 A, B, C, D, E, F, G, H RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (LARGE CHAIN) 32046 4.1.1.39 | Details
32 1BWV 1 A, C, E, G PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE) THE ENZYME IS COMPLEXED WITH CARBON DIOXIDE, MG2+ AND REACTION INTERMEDIATE ANALOGUE, 2-CARBOXYARABINITOL 1,5-BISPHOSPHATE. RESIDUE 201, KCX, OF THE LARGE SUBUNIT IS A LYS CARBAMYLATED AT THE EPSILON-AMINO GROUP 83374 4.1.1.39 | Details
33 4HHH 1 A, B, C, D Ribulose bisphosphate carboxylase large chain 3888 4.1.1.39 | Details
34 1RXO 1 B, E, H, L RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE 3562 4.1.1.39 | Details
35 1AA1 1 B, E, H, L RIBULOSE BISPHOSPHATE CARBOXYLASE (LARGE CHAIN) 3562 4.1.1.39 | Details
36 1AUS 1 L, M, N, O RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE 3562 4.1.1.39 | Details
37 2YBV 1 A, C, E, G, I, K, M, O RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 146786 4.1.1.39 | Details
38 1UZD 1 A, B, E, H, K, O, R, V RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
39 1IWA 1 A, C, E, G, I, K, M, O ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 83374 4.1.1.39 | Details
40 6FTL 1 A, C, E, G Ribulose bisphosphate carboxylase large chain 267567 4.1.1.39 | Details
41 1UPM 1 B, E, H, K, L, O, R, V RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3562 4.1.1.39 | Details
42 1RCO 1 B, E, H, K, L, O, R, V RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE 3562 4.1.1.39 | Details
43 1RCX 1 B, E, H, K, L, O, R, V RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE 3562 4.1.1.39 | Details
44 1RLD 1 A, B RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (LARGE CHAIN) 4097 4.1.1.39 | Details
45 1RSC 1 A, B, C, D, E, F, G, H RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (LARGE CHAIN) 32046 4.1.1.39 | Details
46 1UPP 1 A, C, E, G RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3562 4.1.1.39 | Details
47 1RLC 1 L RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (LARGE CHAIN) 4097 4.1.1.39 | Details
48 2VDI 1 A, B, C, D, E, F, G, H RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
49 4RUB 1 A, B, C, D RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (FORM IV) 4097 4.1.1.39 | Details
50 2V69 1 A, B, C, D, E, F, G, H RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 3055 4.1.1.39 | Details
51 6EKC 1 A1, A2, A3, A4, A5, A6, A7, A8, C1, C2, C3, C4, C5, C6, C7, C8, E1, E2, E3, E4, E5, E6, E7, E8, G1, G2, G3, G4, G5, G6, G7, G8, I1, I2, I3, I4, I5, I6, I7, I8, K1, K2, K3, K4, K5, K6, K7, K8, M1, M2, M3, M4, M5, M6, M7, M8, O1, O2, O3, O4, O5, O6, O7, O8, Q1, Q2, Q3, Q4, Q5, Q6, Q7, Q8, S1, S2, S3, S4, S5, S6, S7, S8 Ribulose bisphosphate carboxylase large chain RbcL 146786 4.1.1.39 | Details
52 1BXN 1 A, C, E, G PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN) 106590 4.1.1.39 | Details
53 3RG6 1 A, B Ribulose bisphosphate carboxylase large chain 32046 4.1.1.39 | Details
54 5NV3 1 A, B, C, D, E, F, G, H Ribulose bisphosphate carboxylase large chain RbcL 1063 4.1.1.39 | Details
55 2WVW 1 A, B, C, D, E, F, G, H RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN 32046 4.1.1.39 | Details